Although thiosulfate leaching is a more sustainable alternative to the toxic cyanidation process for gold extraction, recovering Au(I) from pregnant thiosulfate solutions remains a significant challenge. In this study, novel aqueous two-phase systems (ATPSs) were constructed using green guanidinium ionic liquids (GILs) and inorganic salts for recycling gold thiosulfate from weak alkaline solutions. Key parameters including salt type, salt content, GIL content, extraction time, equilibrium pH, and initial Au(I) concentration were extensively explored. The extraction efficiencies of Au(I) reached 95.8% for [C 3 -Gun]Cl, 96.5% for [C 4 -Gun]Cl, and 97.7% for [C 5 -Gun]Cl system under optimal conditions. Spectral analysis and density functional theory calculations reveal that the main mechanism for Au(I) extraction is that Au(S 2 O 3 ) 2 3− anions replace Cl − anions in GILs, which then interact with guanidinium cations through electrostatic force. In addition, KSCN solution can efficiently strip gold thiosulfate with an efficiency of more than 99% and regenerate the GIL-rich phase simultaneously. The results of five extraction/stripping cycles showed that the extraction efficiency of Au(I) decreased slightly from 98.0 to 90.4%, while the stripping percentage decreased slightly from 99.7 to 92.3%, confirming that GIL-ATPS has excellent cycling performance. These results demonstrate that green ATPSs consisting of GILs provide a sustainable and efficient approach to gold recovery from thiosulfate solutions.