Abstract. The quality of a 3D geological model strongly depends on the type of integrated geological data, their interpretation and associated uncertainties. In order to improve an existing geological model and effectively plan further site investigation, it is of paramount importance to identify existing uncertainties within the model space. Information entropy, a voxel based measure, provides a method for assessing structural uncertainties, comparing multiple model interpretations and tracking changes across consecutively built models. The aim of this study is to evaluate the effect of data assimilation on model uncertainty, model geometry and overall structural understanding. Several geological 3D models of increasing complexity, incorporating different input data categories, were built for the study site Staufen (Germany). We applied the concept of information entropy in order to visualize and quantify changes in uncertainty between these models. Furthermore, we propose two measures, the Jaccard and the City-Block distance, to directly compare dissimilarities between the models. The study shows that different types of geological data have disparate effects on model uncertainty and model geometry. The presented approach using both information entropy and distance measures can be a major help in the optimization of 3D geological models.