In the modern ocean, phytoplankton maintain extremely high primary production/biomass ratios, indicating that they bloom, die, and are replaced weekly. The molecular mechanisms regulating cellular mortality and turnover are largely unknown, even though they effectively short-circuit carbon export to the deep ocean and channel primary productivity to microbial food webs. Here, we present morphological, biochemical, and molecular evidence of caspase-mediated, autocatalytic programmed cell death (PCD) in the diatom Thalassiosira pseudonana in response to iron starvation. Transmission electron microscopy revealed internal degradation of nuclear, chloroplastic, and mitochondrial organelles, all while the plasma membranes remained intact. Cellular degradation was concomitant with dramatic decreases in photosynthetic efficiency, externalization of phosphatidylserine, and significantly elevated caspase-specific activity, with the addition of a broad-spectrum caspase inhibitor rescuing cells from death. A search of the T. pseudonana genome identified six distinct putative metacaspases containing a conserved caspase domain structure. Phytoplankton, or unicellular photoautotrophs that drift with the currents, represent the base of most marine food webs. Although they account for Ͻ1% of the Earth's biomass, they are responsible for nearly 50% of global annual carbonbased primary productivity (31). The steady-state maintenance of such a high production/biomass ratio implies that, on average, these organisms grow, die, and are replaced once every week (57). Substantial cell death via lysis documented in field populations of phytoplankton (1, 2, 14, 16, 58) challenges the long-held misconception among biological oceanographers that phytoplankton are immortal unless eaten by zooplankton grazers and highlights the importance of key death processes to marine ecosystems. Unfortunately, the mechanisms regulating phytoplankton cell death have received relatively little attention, even though they serve to couple primary production to microbial food webs (10), effectively short-circuiting carbon export to the deep ocean and stimulating upper ocean biogeochemical cycling (4, 10).Autocatalytic cell death triggered by specific environmental stresses (e.g., cell age, nutrient deprivation, high light levels, oxidative stress, and UV exposure) in prokaryotic and eukaryotic unicellular phytoplankton (6,10,42,51,59) provides a mechanism to explain the high lysis rates independent of viral attack or grazing. This cellular self destruction is analogous to programmed cell death (PCD) in multicellular organisms, a form of autocatalytic cell suicide in which an endogenous biochemical pathway leads to apoptotic-like morphological changes and, ultimately, cellular dissolution. PCD involves the expression and biochemical coordination of specialized cellular machinery, such as receptors, adaptors, signal kinases, proteases, and nuclear factors. A specific class of intracellular cysteinyl aspartate-specific proteases, termed caspases, is of particular...