A disparity remains between graft survival of renal allografts from deceased donors and from living donors. A better understanding of the molecular mechanisms that underlie this disparity may allow the development of targeted therapies to enhance graft survival. Here, we used microarrays to examine whole genome expression profiles using tissue from 53 human renal allograft protocol biopsies obtained both at implantation and after transplantation. The gene expression profiles of living-donor kidneys and pristine deceased-donor kidneys (normal histology, young age) were significantly different before reperfusion at implantation. Deceased-donor kidneys exhibited a significant increase in renal expression of complement genes; posttransplantation biopsies from well-functioning, nonrejecting kidneys, regardless of donor source, also demonstrated a significant increase in complement expression. Peritransplantation phenomena, such as donor death and possibly cold ischemia time, contributed to differences in complement pathway gene expression. In addition, complement gene expression at the time of implantation was associated with both early and late graft function. These data suggest that complementmodulating therapy may improve graft outcomes in renal transplantation. The persisting graft survival difference between living-and deceased-donor kidneys for renal transplantation 1,2 suggests that a significant potential to improve graft survival further lies in new approaches to overcome the deleterious effects of often inevitable longer cold ischemia times 3 and brain death. 4 Apart from further refining storage solutions and machine perfusion techniques, targeted therapy and modulation of specific pathways before organ retrieval, during cold storage or after implantation, could have beneficial effects and improve the outcome of deceased-donor kidney transplantation.To identify these specific pathways underlying the difference between pristine (normal histology, young donor age) deceased-and living-donor kidneys, we undertook this microarray study comparing implantation and posttransplantation protocol biopsies without rejection, in both deceased-and living-donor recipients. Previous studies using gene expression microarray experiments on implantation biopsies have demonstrated expression profile differences between living-and marginal deceaseddonor kidneys, 5-7 have not always been validated in independent data sets, 5,6 and did not always provide in-depth analyses of the pathways involved. [5][6][7] In