The P450 monooxygenase TleB (CYP107E48) catalyzes intramolecular
C–S bond formation in a thiol-containing substrate, yielding
two sulfur-containing indolactam derivatives (P1 and P2). However,
the key sites influencing TleB’s product selectivity and the
molecular mechanisms underlying the selective C–S bond formation
are not fully understood. To address this, we created an artificial
self-sufficient P450, TleB-CYP116B46, by fusing TleB with the reductase
domain of CYP116B46. Structure-guided engineering of TleB-CYP116B46
generates variant L85G with 99% selectivity for P1 and variant I282L/Q387L/I234F
with 95% selectivity for P2. Exploring TleB homologues and generating
corresponding mutants elucidate the identified sites’ crucial
role in product selectivity. Computational studies suggest a diradical
mechanism for C–S bond formation for both P1 and P2 products.
Intriguingly, we found that the substrate radical could undergo conformational
changes in both the S–H and indole groups. The L85G variant
facilitates the conformational switch of the indole radical group,
thereby leading to the selective C–S bond formation for the
P1 product. By contrast, the I282L/Q387L/I234F variant barricades
the conformational switch of the indole radical group, affording the
P2 product. Our simulations highlight that the protein environment
can dictate the dynamics and positioning of the substrate radical,
thereby leading to the selective C–S bond formation in P450s.