We report herein a new technique for postsynthetic modifications of on-column oligonucleotides. CPG-Supported nonamer polypyrimidine oligodeoxynucleotides comprising 2-(3-iodobenzyloxy)ethyl phosphate at the terminal 5'-ends were successfully capped with 1,3-diethynylbenzene under Sonogashira reaction conditions, resulting in novel intercalating 5'-5' linker in alternate strand Hoogsteen triplexforming oligonucleotidej (TFO) X. In addition, novel 5'-5'-linked alternate strand TFOs, Y and Z, were isolated as a result of on-column Sonogashira coupling with 1,3-diethynylbenzene, followed by Cucatalyzed oxidative arylacetylenic homocoupling(s) between neighboring terminal arylacetylenes. Linkers X, Y, and Z represent the first postsynthesis 5'-5' intercalating linkers for alternate strand TFOs. Reproducibility and verification by independent syntheses using conventional phosphoramidite chemistry and DNA synthesis, as well as thermal stability and molecular modelling studies are included.