Antibiotic resistance
among bacteria puts immense strain
on public
health. The discovery of new antibiotics that work through unique
mechanisms is one important pillar toward combating this threat of
resistance. A functionalized amino dihydropyrimidine was reported
to exhibit antibacterial activity via the inhibition of dihydrofolate
reductase, an underexploited antibacterial target. Despite this promise,
little is known about its structure–activity relationships
(SAR) and mechanism of activity. Toward this goal, the aza-Biginelli
reaction was optimized to allow for the preparation of focused libraries
of functionalized amino dihydropyridines, which in some cases required
the use of variable temperature NMR analysis for the conclusive assignment
of compound identity and purity. Antibacterial activity was examined
using microdilution assays, and compound interactions with dihydrofolate
reductase were assessed using antimicrobial synergy studies alongside in vitro enzyme kinetics, differential scanning fluorimetry,
and protein crystallography. Clear antibacterial SAR trends were unveiled
(MIC values from >64 to 4 μg/mL), indicating that this compound
class has promise for future development as an antibacterial agent.
Despite this, the in vitro biochemical and biophysical
studies performed alongside the synergy assays call the antibacterial
mechanism into question, indicating that further studies will be required
to fully evaluate the antibacterial potential of this compound class.