Isotope-edited two-dimensional Fourier transform infrared spectroscopy (2D FTIR) can potentially provide a unique probe of protein structure and dynamics. However, general methods for the site-specific incorporation of stable 13C=18O labels into the polypeptide backbone of the protein molecule have not yet been established. Here we describe, as a prototype for the incorporation of specific arrays of isotope labels, the total chemical synthesis – via a key ester insulin intermediate – of 97% enriched [(1-13C=18O)PheB24]human insulin, stable-isotope labeled at a single backbone amide carbonyl. The amino acid sequence as well as the positions of the disulfide bonds and the correctly folded structure were unambiguously confirmed by the X-ray crystal structure of the synthetic protein molecule. In vitro assays of the isotope labeled [(1-13C=18O)PheB24]human insulin showed that it had full insulin receptor binding activity. Linear and 2D IR spectra revealed a distinct red-shifted amide I carbonyl band peak at 1595 cm−1 resulting from the (1-13C=18O)PheB24 backbone label. This work illustrates the utility of chemical synthesis to enable the application of advanced physical methods for the elucidation of the molecular basis of protein function.