Although electroporation has been widely accepted as the main gene transfer tool, there is still considerable scope to improve the electroporation efficiency of exogenous DNAs into primary cells. Here, we developed a square-wave pulsing protocol using OptiMEM-GlutaMAX for highly efficient transfection of murine embryonic fibroblasts (MEF) and induced pluripotency stem (iPS) cells using reporter genes as well as gRNA/Cas9-encoding plasmids. An electrotransfection efficiency of > 95% was achieved for both MEF and iPS cells using reporter-encoding plasmids. The protocol was efficient for plasmid sizes ranging from 6.2 to 13.5 kb. Inducing the error prone non-homologous end joining repair by gRNA/Cas9 plasmid transfection, a high rate of targeted gene knockouts of up to 98% was produced in transgenic cells carrying a single-copy of Venus reporter. Targeted deletions in the Venus transgene were efficiently (up to 67% deletion rate) performed by co-electroporation of two gRNAencoding plasmids. We introduced a plasmid electrotransfection protocol which is straightforward , cost-effective, and efficient for CRISPRing murine primary cells. This protocol is promising to make targeted genetic engineering using the CRISPR/Cas9 plasmid system. Abbreviations CRISPR Clustered regularly interspaced short palindromic repeats Cas9 CRISPR-associated protein 9 gRNA Guide RNA iPS Induced pluripotent stem cell KO Knockout MEF Mouse embryonic fibroblast RNPs Ribonucleoprotein The CRISPR (clustered regularly interspaced short palindromic repeats)-Cas9 (CRISPR-associated protein 9) nuclease system is a straightforward , versatile, and highly efficient tool for genome editing of various organisms. Using 'all-in-one' expression vectors containing expression cassettes for guide RNAs and Cas9 nuclease/nickase it is possible to conduct CRISPR/Cas9 studies through a low-cost and straightforward approach 1. However, the efficiency of gene editing using plasmid-based delivery methods remains relatively low, which subsequently increased attention toward using alternate methods employing the Cas9 protein and/or guideRNA (gRNA), or using ribonucleoproteins (RNPs) 2,3. Basically, gene transfer into cells can be achieved via electroporation, lipofection, or viral transduction. Although viral gene transfer is very efficient, it requires time, skilled staff, and high levels of safety issues, whereas it has a limitation in the cargo size 4. On the other side, lipofection suffers from a low efficiency in primary cells. Electroporation is an approach to instantly create pores in the cell membrane using a burst electric pulse and to mediate the transfer of micro-and macro-molecules into cells, embryos, tissues, and organs 5. Since the early papers on electroporation 6 , it has been evident that gene transfer via electroporation is simple, easily applicable, and also efficient compared to lipofection 6. Although electroporation has been widely accepted as the main gene transfer tool, the underlying mechanism has not been completely understood 7. Therefore, ...