SummaryWnt signaling pathways control lineage specification in vertebrate embryos and regulate pluripotency in embryonic stem (ES) cells, but how the balance between progenitor selfrenewal and differentiation is achieved during axis specification and tissue patterning remains highly controversial. The context-and stage-specific effects of the different Wnt pathways produce complex and sometimes opposite outcomes that help to generate embryonic cell diversity. Although the results of recent studies of the Wnt/-catenin pathway in ES cells appear to be surprising and controversial, they converge on the same conserved mechanism that leads to the inactivation of TCF3-mediated repression.Key words: Embryonic stem cells, TCF, -catenin, GSK3, Pluripotency, Self-renewal, Homeodomain-interacting protein kinase Introduction A major goal of developmental and stem cell biology is to elucidate the mechanisms that allow embryonic progenitor cells to choose a specific path for differentiation or to maintain their pluripotency. Pluripotency is a common attribute of the early blastomeres of vertebrates, and is one that allows these cells to contribute to any of the three germ layers (ectoderm, mesoderm or endoderm). The derivation of pluripotent and self-renewing embryonic stem (ES) cells in the early 1980s established one of the best in vitro models of early embryonic development (Evans and Kaufman, 1981;Martin, 1981). Nevertheless, our understanding of the key pathways that lead to the ES cell-like state is far from complete, mainly due to the fact that normal blastocyst cells do not undergo the unlimited self-renewal that is observed in ES cell culture. The question of how a blastocyst cell is able to differentiate into a cell that belongs to any of the three germ layers remains unclear. However, recent progress has provided some insight into this question, with the identification of several signaling pathways that are crucial for lineage specification in the early embryo and in ES cells (Arnold and Robertson, 2009;Boyer et al., 2005;Nichols and Smith, 2011;Rossant and Tam, 2009;Schier and Talbot, 2005;Ying et al., 2008).Another critically important process in the embryo is the acquisition by cells of positional information. In the simplest case, this information corresponds to the specification of axes in the whole embryo and in specific organs. Proper positional values are essential for normal embryogenesis and need to be reconstituted during regeneration for proper organ function (Brockes and Kumar, 2008;Kragl et al., 2009). Whereas animal pole blastomeres of the Xenopus embryo appear to 'remember' their position in the embryo from which they originated (Savage and Phillips, 1989;Sokol and Melton, 1991), there is no clear evidence that such positional information exists within the mammalian blastocyst from which ES cells are derived (Arnold and Robertson, 2009;Gardner et al., 1992;Rossant and Tam, 2009). Nevertheless, some studies argue that such information can arise by a stochastic mechanism de novo, during formation o...