The capping formate anions of the metal–organic framework (MOF) zirconium benzene‐1,3,5‐tricarboxylate (MOF‐808) were removed by a solvent exchange procedure, resulting in a formate‐free MOF‐808 sample containing “geminal” defects consisting of six coordinatively unsaturated sites (CUSs) on each of the Zr6 nodes. Adsorption experiments with this material showed that the uptake of 4‐methylguaiacol from a bio‐oil mixture was proportional to the number of defects and amounted to one mole adsorbed per mole of zirconium. The selective uptake behavior of MOF‐808 towards phenolic compounds was further evident from competitive adsorption experiments between furfuryl alcohol and 4‐methylguaiacol as well as from the excellent (20 wt % for phenolic compounds and <7 wt % for other compounds) uptake performance for real bio‐oil mixtures containing a large concentration and diversity of molecules.