Topic modeling using models such as Latent Dirichlet Allocation (LDA) is a text mining technique to extract human-readable semantic “topics” (i.e., word clusters) from a corpus of textual documents. In software engineering, topic modeling has been used to analyze textual data in empirical studies (e.g., to find out what developers talk about online), but also to build new techniques to support software engineering tasks (e.g., to support source code comprehension). Topic modeling needs to be applied carefully (e.g., depending on the type of textual data analyzed and modeling parameters). Our study aims at describing how topic modeling has been applied in software engineering research with a focus on four aspects: (1) which topic models and modeling techniques have been applied, (2) which textual inputs have been used for topic modeling, (3) how textual data was “prepared” (i.e., pre-processed) for topic modeling, and (4) how generated topics (i.e., word clusters) were named to give them a human-understandable meaning. We analyzed topic modeling as applied in 111 papers from ten highly-ranked software engineering venues (five journals and five conferences) published between 2009 and 2020. We found that (1) LDA and LDA-based techniques are the most frequent topic modeling techniques, (2) developer communication and bug reports have been modelled most, (3) data pre-processing and modeling parameters vary quite a bit and are often vaguely reported, and (4) manual topic naming (such as deducting names based on frequent words in a topic) is common.