Tank 241-S-107 tank characterization plan

Jo, J.

doi:10.2172/61066

Cited by 18 publications

(32 citation statements)

References 0 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…These results are, as in the 1+1 dimensional case, manifestly gauge covariant. We have verified that they are consistent with the explicit loop calculations presented in 10 ; for example the two-gauge-boson matrix elements of id cbe f eadF We also remark that (again following the procedure described in Ref. 5) when both currents are conserved the requirement that the T * product be Lorentz covariant implies u abc 3 = u abc 5 , u abc 1 + u abc 4 + u abc 5 = 0 and u abc 6 = u abc 7 = v 1 = v 2 = 0.…”

Section: Discussionsupporting

confidence: 86%

“…It is easy to see that the results of the diagrammatic calculations are consistent with those presented in Ref. 10 when A R is replaced by −2πJ R . It is in this sense that the above calculation in consistent with the explicit diagrammatic evaluation (up to the undetermined constants η and a + b which we do not evaluate at this point.…”

Section: )supporting

confidence: 86%

“…The discrepancy can be understood by following the procedure used in Ref. 10. What was done was to evaluate various matrix elements of the commutators and then to exhibit some local operators which have the same matrix elements.…”

Section: )mentioning

confidence: 99%

See 2 more Smart Citations

Anomalous commutator corrections to sum rules

Muniain¹,

Wudka²

1996

Phys. Rev. D

View full text Add to dashboard Cite

show abstract

Section: Discussionsupporting

confidence: 86%

Section: )supporting

confidence: 86%

See 1 more Smart Citation

Anomalous commutator corrections to sum rules

Muniain¹,

Wudka²

1996

Phys. Rev. D

View full text Add to dashboard Cite

show abstract

“…The wildtype chain B was aligned to other POP crystal structures that are closed with inhibitor bound to model the coordinates of the covalently linked inhibitor ZPR. All the three structures (i.e., WT, IHBT, and S477C) were bathed in 0.15M KCl solution using the Solvator Module in CHARMM-GUI 21 . Three replicas for each system were generated by using different random seeds to distribute the ions during the solvation process.…”

Section: Molecular Dynamics Simulationsmentioning

confidence: 99%

“…The system was then equilibrated without restraints for an additional 10 ns. The equilibration simulations were performed using OpenMM6.2 simulation package 21,22 on GeForce GTX 780 Ti GPU processors. After equilibration, the systems were simulated for 1.44 μs each using the special-purpose supercomputer Anton designed for long time scale simulations 23 with the exception for systems WT_2, WT_3, IHBT_2, and IHBT_3.…”

Section: Molecular Dynamics Simulationsmentioning

confidence: 99%

Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase

et al. 2019

View full text Add to dashboard Cite

Enzymes in the prolyl oligopeptidase family possess unique structures and substrate specificities that are important for their biological activity and for potential biocatalytic applications. The crystal structures of Pyrococcus furiosus (Pfu) prolyl oligopeptidases (POP) and the corresponding S477C mutant were solved to 1.9 and 2.2 Å resolution, respectively. The wild type enzyme crystallized in an open conformation, indicating that this state is readily accessible, and it contained bound chloride ions and a prolylproline ligand. These structures were used as starting points for molecular dynamics simulations of Pfu POP conformational dynamics. The simulations showed that large-scale domain opening and closing occurred spontaneously, providing facile substrate access to the active site. Movement of the loop containing the catalytically essential histidine into a conformation similar to those found in structures with fully-formed catalytic triads also occurred. This movement was modulated by chloride binding, providing a rationale for experimentally observed activation of POP peptidase catalysis by chloride. Thus, the structures and simulations reported in this study, combined with existing biochemical data, provide a number of insights into POP catalysis.

show abstract

Characterization of Lipid–Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

et al. 2019

View full text Add to dashboard Cite

The cellular membrane constitutes one of the most fundamental compartments of a living cell, where key processes such as selective transport of material and exchange of information between the cell and its environment are mediated by proteins that are closely associated with the membrane. The heterogeneity of lipid composition of biological membranes and the effect of lipid molecules on the structure, dynamics, and function of membrane proteins are now widely recognized. Characterization of these functionally important lipid-protein interactions with experimental techniques is however still prohibitively challenging. Molecular dynamics (MD) simulations offer a powerful complementary approach with sufficient temporal and spatial resolutions to gain atomic-level structural information and energetics on lipid-protein interactions. In this review, we aim to provide a broad survey of MD simulations focusing on exploring lipidprotein interactions and characterizing lipid-modulated protein structure and dynamics that have been successful in providing novel insight into the mechanism of membrane protein function.

show abstract

Tank 241-S-107 tank characterization plan

Cited by 18 publications

References 0 publications

Anomalous commutator corrections to sum rules

Anomalous commutator corrections to sum rules

Crystal Structure and Conformational Dynamics of Pyrococcus furiosus Prolyl Oligopeptidase

Characterization of Lipid–Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation

Contact Info

Product

Resources

About