Summary
Endothelial lipase (LIPG; E.C.3.1.1.3) is one of three members of the triglyceride lipase family that contributes to lipoprotein degradation within the circulation system and plays a major role in HDL metabolism in the body. In this study, in silico methods were used to predict the amino acid sequences, secondary and tertiary structures, and gene locations for LIPG genes and encoded proteins using data from several vertebrate genome projects. LIPG is located on human chromosome 18 and is distinct from 15 other human lipase genes examined. Vertebrate LIPG genes usually contained 10 coding exons located on the positive strand for most primates, as well as for horse, bovine, opossum, platypus and frog genomes. The rat LIPG gene however contained only 9 coding exons apparently due to the presence of a ‘stop’ codon’ within exon 9. Vertebrate LIPG protein subunits shared 58–97% sequence identity as compared with 38–45% sequence identities with human LIPC (hepatic lipase) and LIPL (lipoprotein lipase). Four previously reported human LIPG N-glycosylation sites were predominantly conserved among the 10 potential N-glycosylation sites observed for the vertebrate LIPG sequences examined. Sequence alignments and identities for key LIPG amino acid residues were observed as well as conservation of predicted secondary and tertiary structures with those previously reported for horse pancreatic lipase (LIPP) (Bourne et al., 1994). Several potential sites for regulating LIPG gene expression were observed including CpG islands near the 5′-untranslated regions of the human, mouse and rat LIPG genes; a predicted microRNA binding site near the 3′-untranslated region and several transcription factor binding sites within the human LIPG gene. Phylogenetic analyses examined the relationships and potential evolutionary origins of the vertebrate LIPG gene subfamily with other neutral triglyceride lipase gene families [LIPC and LIPL], other neutral lipase gene families [LIPP, LIPR1, LIPR2, LIPR3, LIPI, LIPH and LIPS], and the extended family of mammalian acid lipases (LIPA, LIPF, LIPJ, LIPK, LIPM, LIPN and LIPO). It is apparent that the triglyceride lipase ancestral gene for the vertebrate LIPG gene predated the appearance of fish during vertebrate evolution > 500 million years ago.