Whereas the improvement in outcome for children with acute lymphoblastic leukemia has been gratifying, the poor outcome of patients who relapse warrants novel treatment approaches. Previously, we identified a characteristic relapse-specific gene expression and methylation signature associated with chemoresistance using a large cohort of matched-diagnosis relapse samples. We hypothesized that "reversing" such a signature might restore chemosensitivity. In the present study, we demonstrate that the histone deacetylase inhibitor vorinostat not only reprograms the aberrant gene expression profile of relapsed blasts by epigenetic mechanisms, but is also synergistic when applied before chemotherapy in primary patient samples and leukemia cell lines. Furthermore, incorporation of the DNA methyltransferase inhibitor decitabine led to reexpression of genes shown to be preferentially methylated and silenced at relapse. Combination pretreatment with vorinostat and decitabine resulted in even greater cytotoxicity compared with each agent individually with chemotherapy. Our results indicate that acquisition of chemoresistance at relapse may be driven in part by epigenetic mechanisms. Incorporation of these targeted epigenetic agents to the standard chemotherapy backbone is a promising approach to the treatment of relapsed pediatric acute lymphoblastic leukemia.
IntroductionRelapsed acute lymphoblastic leukemia (ALL) is one of the leading causes of death among children with cancer. A hallmark of relapsed blasts is their intrinsic chemoresistance compared with what is observed at initial diagnosis. 1,2 Given the frequent failure of conventional salvage chemotherapy, including intensified drug schedules and stem cell transplantation, in the treatment of relapsed ALL, 3,4 innovative strategies are urgently needed.In recent years, it has become clear that cancer can be driven by patterns of altered gene expression mediated not by mechanisms that affect the primary DNA sequence, but through the "epigenetic" processes of DNA-promoter methylation and histone modification. 5,6 DNA methylation is catalyzed by DNA methyltransferases (DNMTs) and has been shown to be an important contributor to carcinogenesis, acting by silencing tumor suppressor genes in many tumor types, including hematologic malignancies. 6,7 Chromatin structure is also regulated by the "histone code," which refers to posttranslational modifications (ie, methylation, acetylation, phosphorylation, and ubiquitination) of key lysine residues on core histone proteins. 8 These 2 epigenetic processes of DNA-promoter methylation and histone modifications are clearly interdependent and coordinated. [9][10][11][12] DNMT inhibitors such as 5-azacitidine and decitabine have the potential to reverse promoter hypermethylation in tumor cells, leading to reexpression of aberrantly silenced genes and inducing tumor cell death. 13 DNMT inhibitors have been demonstrated to be effective therapy for myelodysplastic syndrome, which is characterized by global promoter hypermethylation. 14...