Taxonomic position of &lt;I&gt;Mucor hiemalis&lt;/I&gt; f. &lt;I&gt;luteus&lt;/I&gt;

Budziszewska, Julia; Piatkowska, J.; Wrzosek, Marta

doi:10.5248/111.75

Cited by 11 publications

(10 citation statements)

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Supporting

Mentioning

Contrasting

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“…This is especially true for the largest order of the subphylum, i.e., the Mucorales (O' Donnell et al 2001;White 2006). At the genus level, the results obtained by different authors (O'Donnell et al 2001;Kwasna et al 2006;Jacobs & Botha 2008;Budziszewska & Piatkowska (2010); Alvarez et al 2011;de Souza et al 2012) are consistent with a nonmonophyly of the genus Mucor. This lack of monophyly for this genus reflects the limitations of the current taxonomy.…”

Section: Introductionsupporting

confidence: 77%

“…Phylogenetic species recognition has been proposed to circumvent these problems (Taylor et al 2000). Budziszewska & Piatkowska (2010) and Alvarez et al (2011) performed phylogenetic analyses of ribosomal DNA loci to characterize Mucor species and unravel their phylogenetic relationships. Sequences of the ribosomal DNA have been widely used for fungal identification.…”

Section: Introductionmentioning

confidence: 99%

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Molecular systematics in the genus Mucor with special regards to species encountered in cheese

et al. 2012

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Section: Introductionsupporting

confidence: 77%

Section: Introductionmentioning

confidence: 99%

Molecular systematics in the genus Mucor with special regards to species encountered in cheese

et al. 2012

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“…It is already well known that the large genera of asexual species Candida and Cryptococcus are polyphyletic (54). Other large genera, like Mortierella (55) and Mucor (56), also require revision. Thus, given the poorly defined boundaries of some genera and lack of ITS variability in several species, classifying an unknown ITS sequence to species, and sometimes genus rank will not always produce a definitive answer.…”

Section: Resultsmentioning

confidence: 99%

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Schoch¹,

Robbertse²,

Robert³

et al. 2014

Database

309

218

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DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating a set of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence similarity searches with NR_prefixed accession numbers. A set of standards and protocols is proposed to improve the data quality of new sequences, and we suggest how type and other reference sequences can be used to improve identification of Fungi.Database URL: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA177353

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“…Recently, the introduction of new species or changes of the taxonomic status were supported by sequence analyses of the ITS and/or rDNA genes (Jacobs and Botha 2008;Budziszewska et al 2010;Álvarez et al 2011;Madden et al 2011). Several studies on certain species or species complexes (Li et al 2011;Lu et al 2013) or a particular ecological group (Hermet et al 2012) used multi-marker approaches for phylogenetic species recognition in the genus Mucor.…”

Section: Species Identification and Numbersmentioning

confidence: 99%

“…16, Álvarez et al 2011) or the SSU (e.g. Budziszewska et al 2010) genes have frequently been used in molecular phylogenetic analyses of Mucor because the ITS is too variable to be confidently aligned across the entire genus ). In addition, the RNA polymerase subunit gene (rpb1) was successfully used for multi-marker studies at the species level (Li et al 2011;Hermet et al 2012;Lu et al 2013).…”

Section: Molecular Phylogenymentioning

confidence: 99%

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

et al. 2014

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Many fungi are pathogenic on plants and cause significant damage in agriculture and forestry. They are also part of the natural ecosystem and may play a role in regulating plant numbers/density. Morphological identification and analysis of plant pathogenic fungi, while important, is often hampered by the scarcity of discriminatory taxonomic characters and the endophytic or inconspicuous nature of these fungi. Molecular (DNA sequence) data for plant pathogenic fungi have emerged as key information for diagnostic and classification studies, although hampered in part by non-standard laboratory practices and analytical methods. To facilitate current and future research, this study provides phylogenetic synopses for 25 groups of plant pathogenic fungi in the Ascomycota, Basidiomycota, Mucormycotina (Fungi), and Oomycota, using recent molecular data, up-to-date names, and the latest taxonomic insights. Lineagespecific laboratory protocols together with advice on their application, as well as general observations, are also provided. We hope to maintain updated backbone trees of these fungal lineages over time and to publish them jointly as new data emerge. Researchers of plant pathogenic fungi not covered by the present study are invited to join this future effort. Bipolaris, Botryosphaeriaceae,

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Taxonomic position of <I>Mucor hiemalis</I> f. <I>luteus</I>

Cited by 11 publications

References 0 publications

Molecular systematics in the genus Mucor with special regards to species encountered in cheese

Molecular systematics in the genus Mucor with special regards to species encountered in cheese

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

One stop shop: backbones trees for important phytopathogenic genera: I (2014)

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