“…In accordance with previous work (Falco et al, 2007; Ivanova et al, 2006; Lu et al, 2011; Macfarlan et al, 2012; Niwa et al, 2009; Singer et al, 2014; Singh et al, 2007; Toyooka et al, 2008; Weidgang et al, 2013; Zalzman et al, 2010), we selected Esrrb, Tbx3, and, Zscan4 as potential cell state markers (also see STAR Methods). To better characterize their expression distributions, we simultaneously measured the mRNA copy number of Esrrb, Tbx3, and, Zscan4, in single ES cells using 3-color smFISH.…”