2020
DOI: 10.1093/database/baaa013
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TeaMiD: a comprehensive database of simple sequence repeat markers of tea

Abstract: Tea is a highly cross-pollinated, woody, perennial tree. High heterozygosity combined with a long gestational period makes conventional breeding a cumbersome process. Therefore, marker-assisted breeding is a better alternative approach when compared with conventional breeding. Considering the large genome size of tea (~3 Gb), information about simple sequence repeat (SSR) is scanty. Thus, we have taken advantage of the recently published tea genomes to identify large numbers of SSR markers in the tea. Besides … Show more

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Cited by 27 publications
(18 citation statements)
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“…In addition to nucleotide substitutions, 671 SSRs (simple repeat) were identi ed (another 32, 31, 31 and 30 SSRs occurred in compound formations for CSS, CSA, CIA and CWN, respectively). The number of SSRs was consistent with a previous study [75]. In addition, a total of 270 long repeats and 100 indels also were identi ed.…”
Section: Genetic Variation and Mutational Dynamics Of The Chloroplastsupporting
confidence: 89%
“…In addition to nucleotide substitutions, 671 SSRs (simple repeat) were identi ed (another 32, 31, 31 and 30 SSRs occurred in compound formations for CSS, CSA, CIA and CWN, respectively). The number of SSRs was consistent with a previous study [75]. In addition, a total of 270 long repeats and 100 indels also were identi ed.…”
Section: Genetic Variation and Mutational Dynamics Of The Chloroplastsupporting
confidence: 89%
“…In addition to nucleotide substitutions, 671 SSRs (simple repeat) were identi ed (another 32, 31, 31 and 30 SSRs occurred in compound formations for CSS, CSA, CIA and CWN, respectively). The number of SSRs was consistent with a previous study [71]. In addition, a total of 270 long repeats and 100 indels also were identi ed.…”
Section: Genetic Variation and Mutational Dynamics Of The Chloroplastsupporting
confidence: 89%
“…Likewise, SSR containing with AAG/CTT and AAAG/CTTT were most abundant among tri and tetra-repeats, respectively. Repeat frequency analysis stipulates the low abundance of GC repeats in TFs and similar patterns has been reported in tea genome, indicates that GC repeats are rare in both coding (TFs genes) and non-coding regions of tea genome [8,35]. It is noteworthy that in both coding (TFs genes) and non-coding region of tea genome, di-nucleotide repeats viz.…”
Section: Distribution and Frequency Of Ssrs In Tfs Of Teasupporting
confidence: 63%
“…Nevertheless, microsatellite maker resource in tea is limited with availability of approximately 2000 experimentally validated SSR markers in various earlier studies [14][15][33][34]. Therefore, enriching functionally relevant experimentally validated polymorphic SSR markers will expedite efforts for high density linkage map construction, comparative genomic, and association studies [34][35].…”
Section: Discussionmentioning
confidence: 99%
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