One of the major concerns in a multi-layer system is that interlayer cross-flow may occur if reservoir fluids are produced from commingled layers that have unequal initial pressures. Reservoir would commonly have bigger average reservoir pressure (pore fluid pressure) as it goes deeper. The phenomenon is, however, not followed by the reservoir productivity or injectivity. The existence of reservoir with quite low average-pressure and high injectivity would tend experiencing the cross-flow problem. It is a phenomenon of fluid from bottom layer flowing into upper layer. It would strict upper-layer fluid to flow into wellbore. It is as if there is an injection treatment from bottom layer. The study deploys productivity index an approach parameter taking into account of cross-flow problem instead of injectivity index since it is a production well. The analytical study is to model the reservoir multilayer by addressing to avoid cross-flow problem. The analytical model employed hypothetical and real field data to test it. The scope of this study are: (a) Develop mathematical-based solution to determine the production rate from each layer; (b) Assess different scenarios to optimize production rate, those are: pump setting depth and performance of in-situ choke (ISC) installation. The ISC is acting as an inflow control device (ICD) alike that help to reduce cross-flow occurrence. This study employed macro program to write the code and develop the interface. Fast iterative procedure happens on solving the analytical model. Comparison results recognized that the mathematical-based solution shows a good agreement with the commercial software derived results.