Background: Klinefelter syndrome (KS; 47,XXY) affects 1-2 in 1000 males. Most KS men suffer from an early germ cell loss and testicular fibrosis from puberty onwards. Mechanisms responsible for these processes remain unknown. Previous genomics studies on KS tissue focused on germ cell loss, while a transcriptomic analysis focused on testicular fibrosis has not yet been performed. This study aimed to identify factors involved in the fibrotic remodelling of KS testes by analysing the transcriptome of (non-)fibrotic testicular tissue.Material and methods: RNA sequencing was performed to compare the genetic profile of testicular samples with (KS and testis atrophy) and without (Sertoli cell-only syndrome and fertile controls) fibrosis (n=5, each). Additionally, differentially expressed genes (DEGs) between KS and testis atrophy samples were studied to reveal KS-specific fibrotic genes. DEGs were considered significant when p<0.01 and log2FC>2. Next, downstream analyses (GO and KEGG) were performed. Lastly, RNA scope was performed to validate the results.Results: The first analysis (fibrotic vs non-fibrotic) resulted in 734 significant DEGs (167 up- and 567 down-regulated). Genes involved in the extracellular structure organization (e.g. VCAM1) were found upregulated. KEGG analysis showed an up-regulation of genes involved in the TGF-β pathway.The KS vs TA analysis resulted in 539 significant DEGs (59 up- and 480 down-regulated). Chronic inflammatory response genes were found upregulated. The overlap of X-linked DEGs from the two analyses revealed three genes: matrix-remodelling associated 5 (MXRA5), doublecortin (DCX) and variable charge X-Linked 3B (VCX3B). RNA in situ hybridization showed an overexpression of VCAM1, MXRA5 and DCX within the fibrotic group compared with the non-fibrotic group.Conclusion: In this study, DEGs between fibrotic and non-fibrotic tissue were first compared, revealing fibrotic genes, including VCAM1. Secondly, DEGs between KS and TA samples were studied and the analysis revealed KS-specific, fibrotic genes. When comparing X-linked genes of the first analysis (fibrotic versus non-fibrotic) with those of the second analysis (KS versus TA), KS-related X-linked fibrotic genes were revealed, i.e. MXRA5, DCX and VCX3B. Their potential role in KS-related testicular fibrosis needs further study.