<p>By integrating the advantages of lipids’ biocompatibility and nanobubbles’
potent physicochemical properties, lipid nanobubbles show a great potential in ultrasound
molecular imaging and biocompatible drug/gene delivery. However, under the
interactions of the ultrasound, lipid nanobubbles may fuse with the cell
membrane, changing the local membrane component and re-distributing encapsulated
gas molecules into the hydrophobic region of the cell membrane, which may greatly
affect the dynamics of certain membrane proteins and thus functions of cells. Although
molecular dynamics simulation provides a useful computational tool to reveal
the related molecular mechanisms, the lack of coarse-grained gas model greatly
restricts this purpose. In the current work, we developed a Martini-compatible
coarse-grained gas model based on the results of previous
experiments and atomistic simulations, which could be used for lipid nanobubble
simulations with complicated lipid components. By comparing the results of
well-designed lipid nanobubble, lipid bi-monolayer and lipid bilayer
simulations, we further revealed the role of membrane curvature and
interleaflet coupling in the liquid-liquid phase separation of lipid membranes.
It is worth mention that our developed coarse-grained nitrogen gas model can also be used for other gas-water
interface systems such as pulmonary surfactant, which may overcome the possible
artefacts arising from the usage of vacuum for gas phase. </p>