Carbonate mounds and pockmarks are geologically and ecologically important features distributed worldwide in the world's oceans. In the present study, we present a chemical characterization of deep-sea scleractinian coral skeletons collected in these geomorphological areas at the southeastern continental margin of Brazil. Coral samples were collected from ten sampling stations during cruises aboard the R/V Alpha Crucis, in 2019. Three species of scleractinian corals were studied: Enallopsammia rostrata, Solenosmilia variabilis, and Desmophyllum pertusum. Stable isotopes of carbon and oxygen (δ 13 C and δ 18 O), metals, and phosphorus present in the coral carbonate skeletons were analyzed. Corals are recognized as archives of physical-chemical variations in the marine environment, and the Element/Ca ratios, δ 13 C, and δ 18 O allowed for the characterization of the studied areas. Chemical composition found in pockmark areas indicated affinity to terrigenous and particulate materials input (Ba/Ca, Fe/Ca, Mn/Ca, Li/Ca, and Mg/Ca). Greater availability of nutrients and anthropogenic materials (Pb/Ca, Cd/Ca, Zn/Ca, and P/Ca) is also likely to occur in this region, with some elemental ratios higher than those measured in other oceans. These mounds can act as barriers for metals from land flows. Also, corals benefit from a higher food supply due to stronger currents. The corals at the top of the Alpha Crucis Carbonate Ridge receive significant marine influence. Most coral samples have carbonate of aragonitic origin, except for a specimen of D. pertusum, which presented carbonate of biogenic calcite and aragonite. The results demonstrate the potential of scleractinian corals in the chemical characterization of the deep ocean and the need for further investigation of carbonate mound areas from the SW Atlantic.