The potency and efficacy of ligands for nuclear receptors (NR) result both from the affinity of the ligand for the receptor and the affinity that various coregulatory proteins have for ligand-receptor complexes; the latter interaction, however, is rarely quantified. To understand the molecular basis for ligand potency and efficacy, we developed dual time-resolved fluorescence resonance energy transfer (tr-FRET) assays and quantified both ligand and coactivator/corepressor binding to the thyroid hormone receptor (TR). Promoter-bound TR exerts dual transcriptional regulatory functions, recruiting corepressor proteins and repressing transcription in absence of thyroid hormones (THs), and shedding corepressors in favor of coactivators upon binding agonists, activating transcription. Our tr-FRET assays involve a TRE sequence labeled with terbium (fluorescence donor), TRÎČâąRXRα heterodimer and fluorescein-labeled NR interaction domains of coactivator SRC3 or corepressor NCoR (fluorescence acceptors). Through coregulator titrations, we could determine the affinity of SRC3 or NCoR for TRE-bound TRâąRXR heterodimers, unliganded or saturated with different THs. Alternatively, through ligand titrations, we could determine the relative potencies of different THs. TR agonist potencies were GC-1~T 3~T RIAC~T 4 >>rT 3 , for both coactivator recruitment and corepressor dissociation; the affinity of SRC3 binding to TR-ligand complexes followed a similar trend. This highlights that the low activity of rT 3 derives both from its low affinity for TR and the low affinity of SRC for the TR-rT 3 complex. The TR antagonist NH-3 failed to induce SRC3 recruitment but did effect NCoR dissociation. These assays provide quantitative information on the affinity of two key interactions that are determinants of NR ligand potency and efficacy.Our evolving understanding of the processes by which nuclear receptors (NRs) regulate gene transcription has revealed an increasing number of protein partners with which a receptor interacts to alter chromatin architecture and nucleosome structure, and to regulate the activity of RNA polymerase II. The best characterized proximal protein partners of the NRs are the p160 coactivators, exemplified by the steroid receptor coactivator 3 (SRC3), and corepressors, exemplified by nuclear receptor corepressor (NCoR). Both of these proteins interact with the NRs through specific nuclear receptor interaction domains (NRID) in a ligand-dependent manner, with the corepressor binding to unliganded or antagonist-liganded NR states that Address Correspondence to: John A. Katzenellenbogen, Department of Chemistry and University of Illinois, 600 South Mathews Avenue, Urbana, IL 61801, USA, 217 333 6310 (phone), 217 333 7325 (fax), jkatzene@uiuc.edu.
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Author ManuscriptBiochemistry. Author manuscript; available in PMC 2008 October 28.
Published in final edited form as:Biochemistry. While in general, the potency of a NR ligand is related to the affinity with which it binds to its cognate receptor, poten...