This study aimed to introduce a minimally invasive technique for maxillary sinus floor elevation using the lateral approach (lSFE) and to determine the factors that influence the stability of the grafted area in the sinus cavity. Thirty patients (30 implants) treated with lSFE using minimally invasive techniques from 2015 to 2019 were included in the study. Five aspects of the implant (central, mesial, distal, buccal, and palatal bone heights [BHs]) were measured using cone-beam computed tomography (CBCT) before implant surgery, immediately after surgery (T0), 6 months after surgery (T1), and at the last follow-up visit (T2). Patient characteristics were collected. A small bone window (height, 4.40 ± 0.74 mm; length, 6.26 ± 1.03 mm) was prepared. No implant failed during the follow-up period (3.67 ± 1.75 years). Three of the 30 implants exhibited perforations. Changes in BH, defined as the distance between the implant platform level and the uppermost level of bone graft, of the five aspects of implants showed strong correlations with each other and decreased dramatically before second-stage surgery. RBH did not significantly influence BH changes, whereas smoking status and type of bone graft material were potentially influential factors. During the 3-year observation period, lSFE with a minimally invasive technique demonstrated high implant survival and limited bone reduction in grafted area. In conclusion, patients who were nonsmoker and whose sinus cavity was filled with deproteinized bovine bone mineral (DBBM) had significantly limited bone resorption in grafted area.