Genetic variation may explain some of the disparity in prevalence and control of hypertension across sub-Saharan Africa. Twenty-seven blood pressure (BP) related single nucleotide polymorphisms (SNPs) were genotyped among 2881samples from participants in the MEPI-CVD survey. Associations with known BP variants were evaluated for SBP, DBP and PP as continuous variables and for HTN as a binary variable. Eleven SNPS were associated with at least one BP trait (P<0.05). Four SNPs; rs2004776, rs7726475, rs11837544 and rs2681492 whose nearest genes are AGT, NPR3/SUB1, PLXNC1 and ATP2B1 respectively were associated with SBP. Six SNPs: rs2004776, rs11977526, rs11191548, rs381815, rs2681492 and rs1327235 close to AGT, IGFBP3, CYP17A1, PLEKHA7, ATP2B1 and JAG respectively were associated with DBP while two SNPs located within AGT and IGFBP-3 genes associated with HTN. For PP, four variants rs1458038, rs11725861, rs7726475 and rs11953630 whose corresponding genes are FGF5, CHIC2, SUB1/NPR3 and EBF1 reached significance (P<0.05). Eight SNPs were replicated in the same effect direction as the parent studies. Risk scores defined using published effect sizes were significantly associated with both SBP (P = 0.0026) and DBP (P = 0.0214). The replication of multiple BP variants among East Africans suggests that these variants may have universal effects across ethnic populations.