Material removal in micro-electro-discharge machining (μEDM) is subjected to electrical breakdown within the dynamic discharge gap. The nature (shape, size, and frequency) of the waveforms (voltage and current) in the discharge gap of μEDM is unpredictable resulting in nonisoenergetic pulses. The effect of these uncertainties in the nature of the pulses with respect to machining progress is analyzed at various responses such as pulse frequency, pulse density, material removal rate, and volume removal per discharge. Analysis highlights the performances in terms of stability of the processes. The responses include both online and offline quantities which are monitored at different instances (segment depth) using a developed pulse discriminating system. These responses, anticipated to be non-identical among the μEDM variants (μEDM-drilling and μEDM-dressing), are the center of interest for this study. This anticipation arose due to different tool-work orientations, polarity, and dielectric behavior in debris removal between the variants. On comparing the process stability of these two μEDM variants in terms of the aforementioned responses, the μEDM-dressing is found to be more stable.