Abstract. The Fram Strait is an area with a relatively low and
irregular distribution of diatom microfossils in surface sediments, and thus
microfossil records are scarce, rarely exceed the Holocene, and contain
sparse information about past richness and taxonomic composition. These
attributes make the Fram Strait an ideal study site to test the utility of
sedimentary ancient DNA (sedaDNA) metabarcoding. Amplifying a short, partial
rbcL marker from samples of sediment core MSM05/5-712-2 resulted in 95.7 %
of our sequences being assigned to diatoms across 18 different families, with
38.6 % of them being resolved to species and 25.8 % to genus level.
Independent replicates show a high similarity of PCR products, especially in
the oldest samples. Diatom sedaDNA richness is highest in the Late Weichselian
and lowest in Mid- and Late Holocene samples. Taxonomic composition is
dominated by cold-water and sea-ice-associated diatoms and suggests several
reorganisations – after the Last Glacial Maximum, after the Younger Dryas, and after the Early and after the Mid-Holocene. Different sequences assigned to,
amongst others, Chaetoceros socialis indicate the detectability of intra-specific diversity
using sedaDNA. We detect no clear pattern between our diatom sedaDNA record and
the previously published IP25 record of this core, although proportions
of pennate diatoms increase with higher IP25 concentrations and
proportions of Nitzschia cf. frigida exceeding 2 % of the assemblage point towards past
sea-ice presence.