Peels from the inner epidermis of onion bulbs are a model system in plant cell biology. While the inner epidermis of red onions is characteristically white, small patches of cells sometimes redden, containing vacuolar anthocyanin. This study investigated the spectroscopic properties of these anthocyanic cells. When fluorescent dyes were loaded into the vacuole of onion epidermal cells, the anthocyanic cells showed decreased dye fluorescence. This decrease was observed for fluorescein and carboxyfluorescein that are pumped into the vacuole by anion transporters, for acridine orange which acid loads into the vacuole, and for the fluorescent sugar analogue esculin loaded into the vacuole by sucrose transporters. Similar decreases in carboxyfluorescein fluorescence were observed when dye was loaded into the vacuoles of several other plant species, but decreases were not observed for dyes resident in the tonoplast membrane. As cellular physiology was unaffected in the anthocyanic cells, with cytoplasmic streaming, vacuolar and cytoplasmic pH not being altered, the decreased dye fluorescence from the anthocyanic cells can be attributed to fluorescence quenching. Furthermore, because quenching decreased with increasing temperature. It was concluded, therefore, that vacuolar anthocyanin can statically quench other fluorescent molecules in vivo, an effect previously demonstrated for anthocyanin in vitro.2 of 15 pH-dependant, which means that anthocyanin colour, and the colour of the plant, will depend upon vacuolar pH. Anthocyanin colour may also vary because anthocyanins can interact with themselves, stacking to form super-molecular structures, and can interact with other flavonoid pigments, stabilising the coloured forms at acidic pHs, and also interact with metal ions [1][2][3][4].Like many flavonoids, anthocyanins can be weakly autofluorescent with in vitro excitation and emission peaks in the UV [4,5]. However, in vivo excitation of anthocyanins in both Arabidopsis thaliana and onion (Allium cepa) results in red fluorescence, and has allowed for direct visualisations of vacuole structure and dynamics [6][7][8].The flavonoid biosynthetic pathway, a complex series of reactions in which coumaroyl-CoA is sequentially modified to form various end-products, results in the formation of anthocyanins [9]. The enzymes controlling this pathway vary slightly between species resulting in the variability in the anthocyanidin core and attached sugars. Following their synthesis in the cytoplasm, the vacuolar transport of anthocyanins occurs through several pathways. These include ER-derived vesicles [6,10] and a tonoplast-bound glutathione S-transferase-like transporter that sequesters various glutathione conjugates and anthocyanins into the vacuole [11,12]. The mechanism(s) underlying this second process are unclear as anthocyanin-glutathione conjugates remain undiscovered [12]. The multi-drug resistance-like protein is another membrane-bound transporter known to transport anthocyanin into maize vacuoles [1].It is thought that anth...