We recently found that the treatment of tumor cell lines with cytotoxic drugs leads to the cleavage of WT1 by the serine protease HtrA2. HtrA2 binds to a specific region of WT1, the suppression domain, and then cleaves WT1 at multiple sites. The HtrA2-mediated proteolysis of WT1 leads to its removal from gene promoter regions and changes in gene expression. Cleavage of WT1 by HtrA2 enhances apoptosis. This event is advantageous to the treatment of adult tumors where WT1 acts as an oncogene. However, when WT1 is acting as a tumor suppressor in pediatric malignancies, proteolysis by HtrA2 would be antagonistic to therapy.