While it is generally accepted that a-synuclein oligomers (aSOs) play an important role in neurodegeneration in Parkinson's disease, the basis for their cytotoxicity remains unclear. We have previously shown that docosahexaenoic acid (DHA) stabilizes aSOs against dissociation without compromising their ability to colocalize with glutamatergic synapses of primary hippocampal neurons, suggesting that they bind to synaptic proteins. Here, we develop a proteomic screen for putative aSO binding partners in rat primary neurons using DHA-stabilized human aSOs as a bait protein. The protocol involved co-immunoprecipitation in combination with a photoactivatable heterobifunctional sulfo-LC-SDA crosslinker which did not compromise neuronal binding and preserved the interaction between the aSOsbinding partners. We identify in total 29 proteins associated with DHA-aSO of which eleven are membrane proteins, including synaptobrevin-2B (VAMP-2B), the sodium-potassium pump (Na + /K + ATPase), the V-type ATPase, the voltage-dependent anion channel and calcium-/calmodulin-dependent protein kinase type II subunit gamma; only these five hits were also found in previous studies which used unmodified aSOs as bait. We also identified Rab-3A as a target with likely disease relevance. Three out of four selected hits were subsequently validated with dot-blot binding assays. In addition, likely binding sites on these ligands were identified by computational analysis, highlighting a diversity of possible interactions between aSOs and target proteins. These results constitute an important step in the search for disease-modifying treatments targeting toxic aSOs.
AbbreviationsCo-IP, co-immunoprecipitation; LC-MS/MS, liquid chromatography coupled to mass spectrometric analysis and tandem mass spectrometry; NHS, N-hydroxysuccinimide; NMDA, N-methyl-D-aspartate; PD, Parkinson's disease; sulfo-LC-SDA, sulfo-linker carbon-succinimidyl-diazirine; aSOs, a-synuclein oligomers.Proteomic identification of aSN oligomer ligands F. van Diggelen et al.