Goat colostrum is a rich source of carbohydrates, mainly constituted by lactose, although several minor bioactive oligosaccharides are also present. Analysis of these caprine milk oligosaccharides (COS) is not straightforward, and usually requires a previous fractionation step to remove lactose. In this work, a biotechnological fractionation methodology based on the use of a -galactosidase from Kluyveromyces lactis has been optimized (pH, incubation time, goat milk:enzyme volume ratio) to hydrolyze lactose, preserving the COS profile. Best results were obtained after 15 min of enzymatic treatment using 0.68 U.mL-1 of enzyme at 37 ºC and pH 7. Efficient removal of resulting monosaccharides was finally carried out by the incubation of these samples with Saccharomyces cerevisiae (37 ºC, 24 h). Fractionation of these carbohydrates could help to better determine COS structures and to expand the applications of the purified COS in the food and pharmaceutical industries.