The complete chloroplast genome of <i>Mnium marginatum</i> (With.) P. Beauv.

Shi, Shuo; Li, Shuangling; Zhang, Shijia; Shen, Fengjiao; Niu, Jingyuan; Li, Lin; Jiancheng, Zhao

doi:10.1080/23802359.2021.1884025

Cited by 5 publications

(2 citation statements)

References 13 publications

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“…Nowadays, it is common practice to use publicly available data of whole cpDNA genomes in phylogenetic analyses, especially in research involving assembled genomes (e.g., [ 63 , 64 , 65 , 66 , 67 , 68 ]). However, it is expected that the use of misaligned, non-homologous data may lead to erroneous results of phylogenetic analyses.…”

Section: Discussionmentioning

confidence: 99%

Towards the Well-Tempered Chloroplast DNA Sequences

Turudić

Liber

Grdiša

et al. 2021

Plants

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With the development of next-generation sequencing technology and bioinformatics tools, the process of assembling DNA sequences has become cheaper and easier, especially in the case of much shorter organelle genomes. The number of available DNA sequences of complete chloroplast genomes in public genetic databases is constantly increasing and the data are widely used in plant phylogenetic and biotechnological research. In this work, we investigated possible inconsistencies in the stored form of publicly available chloroplast genome sequence data. The impact of these inconsistencies on the results of the phylogenetic analysis was investigated and the bioinformatic solution to identify and correct inconsistencies was implemented. The whole procedure was demonstrated using five plant families (Apiaceae, Asteraceae, Campanulaceae, Lamiaceae and Rosaceae) as examples.

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Section: Discussionmentioning

confidence: 99%

Towards the Well-Tempered Chloroplast DNA Sequences

Turudić

Liber

Grdiša

et al. 2021

Plants

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“…Therefore this study of R. laxelimbatum will help for better understanding of this genus and provide valuable information for the phylogeny of Bryaceae (Shi et al. 2021 ).…”

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confidence: 99%

The complete chloroplast genome of Rhodobryum laxelimbatum (Hampe ex Ochi) Z. Iwatsuki and T. J. Koponen

Shen

Zhang

et al. 2021

Mitochondrial DNA Part B

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Rhodobryum laxelimbatum (Bryophyta, Bryaceae) is one of the folk medicine resources in Southwest China, which has excellent potential for application in treating cardiovascular diseases. In this study, R. laxelimbatum was sequenced by high-throughput sequencing technology. The complete chloroplast genome is 124,632 bp in length with a quadripartite structure. Two inverted repeat regions are 9837 bp, separated by a large single copy region of 86,444 bp and a small single copy region of 18,514 bp. It encodes 118 unique genes, including 82 protein-coding genes, 32 tRNA genes, and four rRNA genes. The phylogenetic tree was constructed based on the complete chloroplast genome sequences of 18 bryophytes, downloaded from GenBank and acquired in this study. The phylogenetic analysis strongly indicated that R. laxelimbatum was the sister group of the clade which consists of Mnium marginatum , Pohlia cruda and Pohlia nutans . The R. laxelimbatum chloroplast genome sequence provides new genomic resources, which will improve its research, conservation, and application in the future.

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