The complete chloroplast genome of <i>Castanea mollissima</i> ‘Chuizhili’

Zhang, Shijie; Zhu, Cancan; Bai, Xiaoqian; Li, Mimi; Chen, Yu; Zhao, Yuqiang

doi:10.1080/23802359.2021.1903360

Cited by 2 publications

(2 citation statements)

References 6 publications

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“…The following sequences are used: MW044605 (unpublished); MW322901 (Zhang et al. 2021 ); ON710841 (Wang et al. 2023 ); KT793041 (Hinsinger and Strijk 2017 ); OR545365 (Chen et al.…”

Section: Resultsmentioning

confidence: 99%

The complete chloroplast genome assembly of Castanopsis orthacantha Franch. 1899 (Fagaceae) in Southwestern China

Yin,

Gao

2024

Mitochondrial DNA Part B

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Castanopsis orthacantha Franch. 1899 is one representative tree species distributed in the evergreen broad-leaved forests of southwestern China. This species is an important source of timber for manufacturing furniture, floors, and paper. It also plays a significant role in maintaining ecological balance and stability. To help with the genetic diversity assessment of C. orthacantha , we sequenced and assembled the first complete chloroplast genome. The length of the chloroplast genome was 160,588 bp, with a typical quadripartite structure (GenBank accession no. OR900101). The large single-copy (LSC), small single-copy (SSC), and two inverted repeats (IRs) were 90,237 bp, 18,953 bp, and 25,699 bp in length, respectively. We annotated one hundred and thirty genes across the chloroplast genome, including 86 protein-coding genes (79 are unique), 37 tRNA genes (29 are unique), and eight rRNA genes (four are unique). Seventeen genes had one intron, and four were detected with two introns. The maximum likelihood phylogeny suggested that C. orthacantha , C. lamontii , C. sclerophylla , and C. hainanensis formed a clade with a high bootstrap value. This newly sequenced chloroplast genome assembly will aid in the population genetic and phylogenetic studies of Castanopsis species in the future.

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“…The following sequences are used: MW044605 (unpublished); MW322901 (Zhang et al. 2021 ); ON710841 (Wang et al. 2023 ); KT793041 (Hinsinger and Strijk 2017 ); OR545365 (Chen et al.…”

Section: Resultsmentioning

confidence: 99%

The complete chloroplast genome assembly of Castanopsis orthacantha Franch. 1899 (Fagaceae) in Southwestern China

Yin,

Gao

2024

Mitochondrial DNA Part B

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“… 2019 ), Castanea mollissima MW322901.1 (Zhang et al. 2021 ), Castanea crenata MW044605.1 (Jeong et al. 2019 ), Quercus bawanglingensis MK449426.1 (Ma et al.…”

Section: Methodsmentioning

confidence: 99%

The complete chloroplast genome sequence ofLithocarpus litseifolius(Hance) Chun 1837 (Fagaceae) and phylogenetic analysis

Qiu

Xiao

Tian

et al. 2023

Mitochondrial DNA Part B

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Lithocarpus litseifolius (Hance) Chun 1837 is an evergreen tree of Fagaceae, which can be used as sweet tea, natural sweetener, and precious medicinal material. The complete chloroplast genome of L. litseifolius was sequenced and its phylogenetic relationship was analyzed in this study. The chloroplast genome of L. litseifolius has a circular structure with a length of 161,322 bp, and it contains a pair of inverted repeat regions (IRs 25,897 bp), a large single copy (LSC 90,551 bp), and a small single copy (SSC 18,977 bp). There were 131 genes identified, including 37 tRNA, 8 rRNA, and 86 mRNA genes. Phylogenetic analysis of 23 species of Fagaceae indicated that Lithocarpus is monophyletic with strong bootstrap, and L. litseifolius is genetically closely related to Lithocarpus polystachyus.

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The complete chloroplast genome of Castanea mollissima ‘Chuizhili’

Cited by 2 publications

References 6 publications

The complete chloroplast genome assembly of Castanopsis orthacantha Franch. 1899 (Fagaceae) in Southwestern China

The complete chloroplast genome assembly of Castanopsis orthacantha Franch. 1899 (Fagaceae) in Southwestern China

The complete chloroplast genome sequence ofLithocarpus litseifolius(Hance) Chun 1837 (Fagaceae) and phylogenetic analysis

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