The complete chloroplast genome of <i>Iris tectorum</i> (Iridaceae)

Liu, Zhenzhen; Yu, Xiaolei; Cui, Pengdi; Tian, Xiaoxuan

doi:10.1080/23802359.2020.1742599

Cited by 4 publications

(3 citation statements)

References 9 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…These characteristics of CP genomes are different from those of nuclear and mitochondrial genomes. Moreover, these CP genome characteristics are consistent with earlier reports on I. tectorum [ 42 ], I. dichotoma [ 26 ], and I. domestica [ 26 , 45 ]. Thus, the sequencing conducted in the current study has enriched the CP genome data of Iris species and could serve as an essential source for species identification and phylogeny.…”

Section: Resultssupporting

confidence: 91%

See 1 more Smart Citation

Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Iris Species

Feng

Wang

et al. 2022

BioMed Research International

View full text Add to dashboard Cite

Iris species, commonly known as rainbow flowers because of their attractive flowers, are extensively grown in landscape gardens. A few species, including Belamcanda chinensis, the synonym of I. domestica and I. tectorum, are known for their medicinal properties. However, research on the genomes and evolutionary relationships of Iris species is scarce. In the current study, the complete chloroplast (CP) genomes of I. tectorum, I. dichotoma, I. japonica, and I. domestica were sequenced and compared for their identification and relationship. The CP genomes of the four Iris species were circular quadripartite with similar lengths, GC contents, and codon usages. A total of 113 specific genes were annotated, including the ycf1 pseudogene in all species and rps19 in I. japonica alone. All the species had mononucleotide (A/T) simple sequence repeats (SSRs) and long forward and palindromic repeats in their genomes. A comparison of the CP genomes based on mVISTA and nucleotide diversity (Pi) identified three highly variable regions (ndhF-rpl32, rps15-ycf1, and rpl16). Phylogenetic analysis based on the complete CP genomes concluded that I. tectorum is a sister of I. japonica, and the subgenus Pardanthopsis with several I. domestica clustered into one branch is a sister of I. dichotoma. These findings confirm the feasibility of superbarcodes (complete CP genomes) for Iris species authentication and could serve as a resource for further research on Iris phylogeny.

show abstract

Section: Resultssupporting

confidence: 91%

“…Approximately 20 complete CP genomes about Iris species were documented in NCBI. However, the data need to be enriched to provide detailed information on the phylogeny [26,[38][39][40][41][42][43][44][45].…”

Section: Introductionmentioning

confidence: 99%

Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Iris Species

Feng

Wang

et al. 2022

BioMed Research International

View full text Add to dashboard Cite

show abstract

“…With the advent of advanced sequencing techniques, over 90 Iris plastomes have recently been characterized (http://www.ncbi.nlm.nih.gov/genomes) [31,[33][34][35][36]. Genome-scale markers provide good insight into phylogenetic relationships, as observed in many plastome phylogenies [37].…”

Section: Introductionmentioning

confidence: 99%

Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes

Choi,

Lee

2024

PLoS ONE

View full text Add to dashboard Cite

Iris is a cosmopolitan genus comprising approximately 280 species distributed throughout the Northern Hemisphere. Although Iris is the most diverse group in the Iridaceae, the number of taxa is debatable owing to various taxonomic issues. Plastid genomes have been widely used for phylogenetic research in plants; however, only limited number of plastid DNA markers are available for phylogenetic study of the Iris. To understand the genomic features of plastids within the genus, including its structural and genetic variation, we newly sequenced and analyzed the complete plastid genome of I. orchioides and compared it with those of 19 other Iris taxa. Potential plastid markers for phylogenetic research were identified by computing the sequence divergence and phylogenetic informativeness. We then tested the utility of the markers with the phylogenies inferred from the markers and whole-plastome data. The average size of the plastid genome was 152,926 bp, and the overall genomic content and organization were nearly identical among the 20 Iris taxa, except for minor variations in the inverted repeats. We identified 10 highly informative regions (matK, ndhF, rpoC2, ycf1, ycf2, rps15-ycf, rpoB-trnC, petA-psbJ, ndhG-ndhI and psbK-trnQ) and inferred a phylogeny from each region individually, as well as from their concatenated data. Remarkably, the phylogeny reconstructed from the concatenated data comprising three selected regions (rpoC2, ycf1 and ycf2) exhibited the highest congruence with the phylogeny derived from the entire plastome dataset. The result suggests that this subset of data could serve as a viable alternative to the complete plastome data, especially for molecular diagnoses among closely related Iris taxa, and at a lower cost.

show abstract

The chloroplast genome of the Iris japonica Thunberg (Butterfly flower) reveals the genomic and evolutionary characteristics of Iris species

Zhang

Yang

et al. 2022

Mitochondrial DNA Part B

View full text Add to dashboard Cite

Iris japonica Thunberg is one of the horticultural species belonging to the Iris genus and Iridaceae family. Previous studies have revealed its hepatoprotective activity and ornamental values. However, little genetic and genomic information about this species is available. Here, to decipher the chloroplast genome and reveal its evolutionary characteristics, we sequenced, de novo assembled, and comprehensively analyzed the chloroplast genome of I. japonica . The genome was 152,453 bp in length and displayed a circular structure with a large single-copy region, a small single-copy region, and two inverted repeat regions. It contained 131 genes, including 85 protein-coding genes, eight ribosomal RNA genes, and 38 transfer RNA genes. We also identified 23 microsatellite repeat sequences, 34 tandem repeat sequences, and 60 dispersed repeat sequences in the chloroplast genome of I. japonica . Sequence divergence analyses of the chloroplast genomes of 20 Iris species revealed that the top four most highly variable regions were ndhC-trnV-UAC , rpl22-rps19 , rps16-trnQ-UUG , and trnG-UCC-trnR-UCU . Phylogenetic analysis showed that I. japonica was most closely related to I. tectorum . This study reported a new chloroplast genome of I. japonica and performed comparative analyses of 20 Iris chloroplast genomes. The results would facilitate the evolutionary research and development of molecular markers for Iris species.

show abstract

The complete chloroplast genome of Iris tectorum (Iridaceae)

Cited by 4 publications

References 9 publications

Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Iris Species

Comparison Analysis Based on Complete Chloroplast Genomes and Insights into Plastid Phylogenomic of Four Iris Species

Complete plastid genome of Iris orchioides and comparative analysis with 19 Iris plastomes

The chloroplast genome of the Iris japonica Thunberg (Butterfly flower) reveals the genomic and evolutionary characteristics of Iris species

Contact Info

Product

Resources

About