The complete chloroplast genome sequence of Hibiscus sabdariffa (Malvaceae)

Kwon, Sae-Hyuk; Park, Yunmi; Jang, You Lim; Kwon, Hae‐Yun

doi:10.11110/kjpt.2022.52.2.123

Cited by 4 publications

(4 citation statements)

References 21 publications

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…This highlights the potential applications of chloroplast genomes in the development of highly species-specific molecular markers, even at the intra-species level, thereby overcoming challenges posed by minimal genetic divergence. Nevertheless, the majority of studies on Hibiscu s chloroplast genomes have predominantly focused on the taxonomic level of genus, leaving in-depth intra-species studies relatively unexplored 10 , 23 – 25 . Given the breeding challenges of H. syriacus outlined earlier, comparative studies at the intra-species level are not only crucial but indispensable.…”

Section: Background and Summarymentioning

confidence: 99%

Pan-chloroplast genomes for accession-specific marker development in Hibiscus syriacus

Go,

Koo,

Jung

et al. 2024

Sci Data

View full text Add to dashboard Cite

Hibiscus syriacus L. is a renowned ornamental plant. We constructed 95 chloroplast genomes of H. syriacus L. cultivars using a short-read sequencing platform (Illumina) and a long-read sequencing platform (Oxford Nanopore Technology). The following genome assembly, we delineate quadripartite structures encompassing large single-copy, small single-copy, and inverted repeat (IRa and IRb) regions, from 160,231 bp to 161,041 bp. Our comprehensive analyses confirmed the presence of 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes in the pan-chloroplast genome, consistent with prior research on the H. syriacus chloroplast genome. Subsequent pangenome analysis unveiled widespread genome sequence conservation alongside unique cultivar-specific variant patterns consisting of 193 single-nucleotide polymorphisms and 61 insertions or deletions. The region containing intra-species variant patterns, as identified in this study, has the potential to develop accession-specific molecular markers, enhancing precision in cultivar classification. These findings are anticipated to drive advancements in breeding strategies, augment biodiversity, and unlock the agricultural potential inherent in H. syriacus.

show abstract

Section: Background and Summarymentioning

confidence: 99%

Pan-chloroplast genomes for accession-specific marker development in Hibiscus syriacus

Go,

Koo,

Jung

et al. 2024

Sci Data

View full text Add to dashboard Cite

show abstract

“…Genus Hibiscus merupakan salah satu genus dari Famili Malvaceae. Genus ini terdiri dari tumbuhan yang memiliki habitus berupa herba, perdu, atau pohon (Kwon et al, 2022). Genus Hibiscus terdiri dari lebih dari 400 spesies dan tersebar dari daerah beriklim sub tropis hingga wilayah iklim tropis.…”

Section: Pendahuluanunclassified

Hubungan Kekerabatan Fenetik 6 Spesies Anggota Genus Hibiscus Berdasarkan Karakter Morfologi

Palupi¹,

Aryani²,

Sukarsa³

et al. 2023

Bioscientist j. ilm. bosbiol.

View full text Add to dashboard Cite

The Hibiscus genus is a member of the Malvaceae family with striking flowers of various colors. Hibiscus is a genus that is easy to find in Indonesia because it is usually used as an ornamental plant, hedge plant, cut flower, medicinal plant, or tea for drinking. This research was conducted to know the phenetic relationship of 6 species of Hibiscus based on morphological characters. The research was conducted by observing 57 morphological characteristics of 6 species of Hibiscus, then UPGMA (Unweighted Pair Group Method with Arithmatic Mean) analysis using MEGA 11 software. The samples in this study were six species belonging to the Hibiscus genus, namely Hibiscus rosa-sinensis L., Hibiscus tiliaceus L., Hibiscus macrophyllus (Blume) Okenlada, Hibiscus mutabilis L., Hibiscus sabdariffa L., and Hibiscus acetosella Welw. ex Hiern. The results showed that 6 species of Hibiscus formed 3 clusters based on differences in habitus and stem diameter. H. tiliaceus and H. macrophyllus formed cluster one, H. acetosella and H. sabdariffa formed cluster two, while H. rosa-sinensis and H. mutabilis formed cluster three. The closest phenetic relationship is between H. acetosella and H. sabdariffa, with a dissimilarity index of 0.140 or 86% similarity. The furthest phenetic relationship was in H. rosa-sinensis and H. macrophyllus with a dissimilarity index of 0.737 or a similarity percentage of 26.3%.

show abstract

“…Typically, most cp genomes are circular 120-170 kb long DNA molecules with a quadripartite structure and consist of 120-130 genes, including a large single-copy (LSC, 80-90 kb), a small single-copy (SSC, 16-27 kb), and a pair of inverted repeats (IRs) (Chumley et al, 2006;Cui et al, 2019;Yoo et al, 2021). Owing to its highly conserved sequence and structure, the cp genome is useful for phylogenetic and evolutionary studies of plants (Palmer et al, 1988;Kwon et al, 2022). Recently, whole plastid genomes have been widely used in phylogenetic studies to analyze groups of plants whose evolutionary relationships remain unresolved (Gitzendanner et al, 2018).…”

Section: Introductionmentioning

confidence: 99%

Characterization of the complete chloroplast genome sequence of Maesa japonica (Myrsinaceae)

KIM,

PARK,

JANG

et al. 2023

Korean J. Pl. Taxon

View full text Add to dashboard Cite

Maesa Forssk. (Myrsinaceae) has approximately 200 species distributed in the tropics from southern Africa to East Asia. Among them, Maesa japonica (Thunb.) Moritzi ex Zoll. is distributed throughout China, Japan, Taiwan, Vietnam, and Korea. In Korea, this species is found only on Jejudo Island. In this study, we conducted whole-genome sequencing of M. japonica chloroplast (cp). The complete cp genome sequence of M. japonica was found to be 157,189 bp in length, consisting of large (87,780 bp) and small (18,143 bp) single-copy regions (LSC and SSC, respectively) and a pair of identical inverted repeats (IRs) (25,633 bp). The overall GC content of the cp genome was 38%, while those of the LSC, SSC, and each IR were 35.2%, 30.9%, and 43.1%, respectively. Furthermore, 130 genes consisting of 85 protein-coding genes, 37 transfer RNA genes and eight ribosomal RNA genes were identified in the cp genome. A phylogenetic analysis of 12 taxa inferred from the cp genome revealed a close relationship between M. salicifolia and M. japonica. The complete cp genome sequence of M. japonica provides valuable information for future evolutionary and phylogenetic studies of Maesa.

show abstract

The complete chloroplast genome sequence of Hibiscus sabdariffa (Malvaceae)

Cited by 4 publications

References 21 publications

Pan-chloroplast genomes for accession-specific marker development in Hibiscus syriacus

Pan-chloroplast genomes for accession-specific marker development in Hibiscus syriacus

Hubungan Kekerabatan Fenetik 6 Spesies Anggota Genus Hibiscus Berdasarkan Karakter Morfologi

Characterization of the complete chloroplast genome sequence of Maesa japonica (Myrsinaceae)

Contact Info

Product

Resources

About