The complete mitochondrial genome analysis and phylogenetic position of the short barbeled grunter <i>Hapalogenys nigripinnis</i> (Lobotiformes: Hapalogenyidae) from Jeju island, Korea

Ji, Seung-Chul; Kim, Jae-Hoon; Jung, Min-Hwan; Kim, Jung-Hyun; Kim, Hyo-Won; Kim, Moo‐Sang; Myeong, Jeong‐In; Kim, Dae Jung

doi:10.1080/23802359.2020.1831982

Mitochondrial DNA Part B

2020

DOI: 10.1080/23802359.2020.1831982

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The complete mitochondrial genome analysis and phylogenetic position of the short barbeled grunter Hapalogenys nigripinnis (Lobotiformes: Hapalogenyidae) from Jeju island, Korea

Seung-Chul Ji

Jae-Hoon Kim

Min-Hwan Jung

et al.

Abstract: This study analyzed the complete mitochondrial genome of the short barbeled grunter Hapalogenys nigripinnis (Accession number: MT374064). The complete mitogenome was 16,476 bp long and included 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region. Nucleotide composition of the genome was A: 28.70%, T:27.46%, G: 15.73%, and C: 28.11%. All genes were encoded on the H-strand, except for the NADH dehydrogenase subunit (ND6) and 8 tRNA genes. When compared this sequence with t… Show more

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Cited by 2 publications

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The complete mitochondrial genome of Diagramma pictum (Perciformes: Haemulidae)

Chen

Liao

et al. 2021

Mitochondrial DNA Part B

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The painted sweetlips Diagramma pictum (Thunberg 1792) is an important fish for commercial fisheries which is widely distributed in the Indo-West Pacific Ocean. It can change its external coloration and pattern during their lives. The complete mitochondrial genome of D. pictum was determined in this study. The genome was 16,531 bp in length and consisted of 13 protein coding genes, 22 transfer RNA (tRNA), 2 ribosomal RNA (rRNA), and one noncoding control region. The overall base composition was estimated to be A: 27.5%; T: 24.7%; C: 30.9% and G: 16.9% with AT bias of 52.2%. The molecular phylogenetic result revealed that D. pictum did not form an independent branch but was tightly clustered inside the Plectorhinchus groups, closely related to the species Plectorhinchus chaetodonoides, indicating the close relationships between genera Diagramma and Plectorhinchus. These results may provide important genomic information for species evolution and mitogenome based phylogenetic analyses of D. pictum in the family Haemulidae.

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The complete mitochondrial genome of Diagramma pictum (Perciformes: Haemulidae)

Chen

Liao

et al. 2021

Mitochondrial DNA Part B

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The genome survey of male and female Hapalogenys analis

Liu,

Qu,

Shi

et al. 2024

Front. Mar. Sci.

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Effectively assessing the basic genomic information of a species is fundamental for conducting molecular research and provides a foundation for constructing whole-genome maps. Hapalogenys analis is a temperate and tropical nearshore marine fish in China’s coastal waters, with significant economic value and high aquaculture potential. However, the genomic differences between male and female individuals of this species are not yet apparent. This study conducted whole-genome survey analyses on male and female H. analis to provide basic genomic information. According to K-mer analysis, the genome sizes of female and male fish were 436.24 Mb and 493.21 Mb. The heterozygosity rates were 0.58% for females and 0.23% for males. The proportion of repetitive sequences of female and male fish were 42.95% and 51.20%. The GC content of the genomes was 43.30% for female and 43.20% for male. The sizes of the assembled genomes were 589.18 Mb for female and 592.02 Mb for male, with N50 lengths of 3,135 bp and 3,041 bp, respectively. SSR screening results showed that 959,447 and 894,158 SSR sequences were detected in the genomes of female and male, respectively. The lengths of the assembled mitochondrial genome sequences were 19,755 bp for female and 19,754 bp for male, each containing 38 genes. Among these mitochondrial sequences, 13 protein-coding genes were identified, including 7 NADH dehydrogenase, 3 cytochrome c oxidase, 1 cytochrome b, and 2 ATP synthase genes. Both sequences contained 23 tRNA genes and 2 rRNA genes. This study provides a theoretical basis for constructing a high-quality whole genome of H. analis and valuable data for subsequent molecular breeding research.

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The complete mitochondrial genome analysis and phylogenetic position of the short barbeled grunter Hapalogenys nigripinnis (Lobotiformes: Hapalogenyidae) from Jeju island, Korea

Cited by 2 publications

References 13 publications

The complete mitochondrial genome of Diagramma pictum (Perciformes: Haemulidae)

The complete mitochondrial genome of Diagramma pictum (Perciformes: Haemulidae)

The genome survey of male and female Hapalogenys analis

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