The complete mitochondrial genome of the millipede <i>Epanerchodus koreanus</i> Verhoeff, 1937 collected in limestone cave of Korea (Polydesmidae: Polydesmida)

Joo, Sungbae; Lee, Jungmo; Lee, Da-Young; Xi, Hong; Park, Jongsun

doi:10.1080/23802359.2020.1840933

Cited by 6 publications

(9 citation statements)

References 21 publications

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“…The base compositions of the two genomes were almost the same. Base composition analysis showed that the whole mitogenomes of Polydesmida species were biased towards A and T ( Table 3 ), from 64.04% for Appalachioria falcifera to 75.11% for Epanerchodus koreanus , which was the same as in previous studies [ 33 ]. Additionally, the A + T% of PCGs, rRNAs, and tRNAs in Polydesmida species were also higher than the G + C%.…”

Section: Resultssupporting

confidence: 81%

“…These lengths were well within the range found in other species of Polydesmida. Each mitogenome contained 13 PCGs, 19 tRNAs, 2 rRNAs, and one CR, which was different from typical sets of genes found in invertebrate mitogenomes in terms of the lack of trnI , trnL2 , and trnV [ 33 ]. The genes of both mitogenomes were all situated on the minor strand (N-stand), a characteristic shared with other species of Polydesmida [ 20 , 33 ].…”

Section: Resultsmentioning

confidence: 99%

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Complete Mitochondrial Genomes of Nedyopus patrioticus: New Insights into the Color Polymorphism of Millipedes

Zhang,

Xu,

Chen

et al. 2024

CIMB

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There has been debate about whether individuals with different color phenotypes should have different taxonomic status. In order to determine whether the different color phenotypes of Nedyopus patrioticus require separate taxonomic status or are simply synonyms, here, the complete mitochondrial genomes (mitogenomes) of two different colored N. patrioticus, i.e., red N. patrioticus and white N. patrioticus, are presented. The two mitogenomes were 15,781 bp and 15,798 bp in length, respectively. Each mitogenome contained 13 PCGs, 19 tRNAs, 2 rRNAs, and 1 CR, with a lack of trnI, trnL2, and trnV compared to other Polydesmida species. All genes were located on a single strand in two mitogenomes. Mitochondrial DNA analyses revealed that red N. patrioticus and white N. patrioticus did not show clear evolutionary differences. Furthermore, no significant divergence was discovered by means of base composition analysis. As a result, we suggest that white N. patrioticus might be regarded as a synonym for red N. patrioticus. The current findings confirmed the existence of color polymorphism in N. patrioticus, which provides exciting possibilities for future research. It is necessary to apply a combination of molecular and morphological methods in the taxonomy of millipedes.

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Section: Resultssupporting

confidence: 81%

Section: Resultsmentioning

confidence: 99%

Complete Mitochondrial Genomes of Nedyopus patrioticus: New Insights into the Color Polymorphism of Millipedes

Zhang,

Xu,

Chen

et al. 2024

CIMB

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“…Compared with individual genes, the mitogenome remains a promising tool for inferring phylogenetic relationships due to its high information content. Recently, some mitogenomes in Diplopoda were published and applied to explore phylogenetic relationships [ 13 , 14 , 15 , 16 ]. However, only a few mitogenomes have been published for Spirobolida [ 17 ].…”

Section: Introductionmentioning

confidence: 99%

The Complete Mitochondrial Genome of Spirobolus bungii (Diplopoda, Spirobolidae): The First Sequence for the Genus Spirobolus

Cao³

et al. 2022

Genes

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Millipedes (Diplopoda) comprise one of the most important groups of large soil arthropods in terrestrial ecosystems; however, their phylogenetic relationships are poorly understood. Herein, the mitochondrial genome (mitogenome) of Spirobolus bungii was sequenced and annotated, which was 14,879 bp in size and included 37 typical mitochondrial genes (13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), and 22 transfer RNA genes (tRNAs)). Most of the 13 PCGs had ATN (AT/A/T/G) as the start codon except for COX1, which used CGA, and most PCGs ended with the T end codon. By comparing the gene arrangements of the mitogenomes among Diplopoda species, rearrangement occurred between and within orders. In contrast to Narceus annularus, the mitogenome genes of S. bungii had consistent orders but were transcribed in completely opposite directions, which was a novel finding in Spirobolidae. Moreover, the phylogenetic relationships within Diplopoda, which were based on the sequences of 13 PCGs, showed that S. bungii was clustered with N. annularus, followed by Abacion magmun. This indicated that there might be a close relationship between Callipodida and Spirobolida. These results could contribute to further studies on the genetics and evolutionary processes of S. bungii and other Diplopoda species.

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“… 2009 ; Li 2013 ) available in the Genome Information System ( http://geis.infoboss.co.kr/ ) utilized in the previous organelle genomic studies (Joo et al. 2020 ; Lee et al. 2020 ; Park, Xi, Oh, 2020 ; Jung et al.…”

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confidence: 99%

The complete mitochondrial genome of Aclees taiwanensis Kôno, 1933 (Coleoptera: Curculionidae)

Hong

Lee

et al. 2022

Mitochondrial DNA Part B

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We sequenced the complete mitochondrial genome of Aclees taiwanensis collected in Korea. The circular mitogenome of A. taiwanensis is 17,435 bp, longer than that of Aclees cribratus , and includes 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a control region/D-loop. The AT ratio is 75.4%. Maximum-likelihood and Bayesian inference phylogenetic trees showed that A. taiwanensis was clustered with A. cribratus with full-support values for both trees.

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The complete mitochondrial genome of the millipede Epanerchodus koreanus Verhoeff, 1937 collected in limestone cave of Korea (Polydesmidae: Polydesmida)

Cited by 6 publications

References 21 publications

Complete Mitochondrial Genomes of Nedyopus patrioticus: New Insights into the Color Polymorphism of Millipedes

Complete Mitochondrial Genomes of Nedyopus patrioticus: New Insights into the Color Polymorphism of Millipedes

The Complete Mitochondrial Genome of Spirobolus bungii (Diplopoda, Spirobolidae): The First Sequence for the Genus Spirobolus

The complete mitochondrial genome of Aclees taiwanensis Kôno, 1933 (Coleoptera: Curculionidae)

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