The complete mitochondrial genome of
            <i>Scolopax rusticola</i>
            (Charadriiformes: Scolopacidae)

Yu, Tingting; Hu, Chaochao; Chang, Qing; Yang, Ruiying; Dong, Wan-Wei; Xie, Wen

doi:10.3109/19401736.2014.963819

Cited by 5 publications

(5 citation statements)

References 5 publications

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“…MZ157405) was a 16,919 bp long circular DNA with overall nucleotide frequencies of A = 32.5%, T = 26.2%, C = 28.6%, and G = 12.7% and an A + T content of 58.7%. The GC skew was −0.3850, which showed a remarkable C skew and was similar to the mitogenomes of other Charadriiformes species (Yu et al 2014 ; Yang et al 2016 ). With the exception of COX1 , which started with GTG, all PCGs had typical ATN start codons, and all PCGs ended with a complete triplet codon (TAA, AGG, AGA, or TAG), except for COX3 , ND2 , and ND4 , which ended with an incomplete T. All transfer RNA (tRNA) genes had typical cloverleaf secondary structures, with the exception of tRNA-Ser (AGY), in which the dihydrouridine arm formed a simple loop.…”

supporting

confidence: 71%

The mitogenome of common snipe, Gallinago gallinago gallinago Linnaeus, 1758 and evolutionary implications for the family Scolopacidae

Yang

Hou

Liu

et al. 2021

Mitochondrial DNA Part B

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The mitochondrial genome (mitogenome) of Gallinago gallinago gallinago Linnaeus, 1758 was determined by the high-throughput data. The assembled mitogenome was 16,919 bp in length, with a 58.7% A + T content and GC skew of −0.3850. Among 13 PCGs, an unusual start codon (GTG) was identified for the COX1 gene, and incomplete stop codons (T-) were found in the COX3 , ND2 and ND4 genes. The function of a cytosine insertion at site 174 in the ND3 gene and its phylogenetic significance are worthy of further scrutiny. In the control region ( CR ), thirteen 15-bp simple sequence repeats were found in G. g. gallinago . Phylogenetic analysis indicated that Gallinago was clustered at the basal position of the Scolopax clade and that the monophyly of Gallinago was also recovered. The mitogenome data of G. g. gallinago provides useful resources for further studying the evolution of Scolopacidae.

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supporting

confidence: 71%

The mitogenome of common snipe, Gallinago gallinago gallinago Linnaeus, 1758 and evolutionary implications for the family Scolopacidae

Yang

Hou

Liu

et al. 2021

Mitochondrial DNA Part B

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“…The gene order and structure were similar to most other aves (Yu et al, 2014;Zhang et al, 2014), containing 22 transfer RNA, 13 protein-coding genes (PCGs), 2 rRNA and a control region (D-loop; Table 1). The gene order and structure were similar to most other aves (Yu et al, 2014;Zhang et al, 2014), containing 22 transfer RNA, 13 protein-coding genes (PCGs), 2 rRNA and a control region (D-loop; Table 1).…”

mentioning

confidence: 71%

The complete mitochondrial genome of Numenius phaeopus (Charadriiformes, Scolopacidae)

Ding

Zhang

2015

Mitochondrial DNA Part A

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The complete sequence of the mitochondrial DNA genome of Numenius phaeopus was determined using the polymerase chain reaction method. The whole genome (17,091 bp in length) contained 37 genes (13 protein-coding genes [PCGs], 2 rRNA genes and 22 tRNA genes) and a control region (D-loop), which was similar to the typical mtDNA of vertebrates. Almost all the PCGs in N. phaeopus were distributed on the H-strand, except for the ND6 subunit gene and eight tRNA genes, which were encoded on the L-strand.

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“… 2020 ), Scolopax rusticola KM434134 (Yu et al. 2016 ), Tringa erythropus KX230491 (Cheng et al. 2016 ), and Vanellus vanellus KM577158 (Hu et al.…”

Section: Methodsmentioning

confidence: 99%

Complete mitochondrial genome MK992912 of Great Knot ( Calidris tenuirostris ) is a chimera with DNA from Pacific Golden Plover Pluvialis fulva (Aves: Charadriiformes)

Sangster,

Luksenburg

2024

Mitochondrial DNA Part B

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A complete mitochondrial genome of Great Knot ( Calidris tenuirostris ), MK992912, was published by He and colleagues in 2020. Here we show that this mitogenome is actually a chimera containing DNA fragments of both C. tenuirostris (15,567 bp, 92.8%) and Pacific Golden Plover ( Pluvialis fulva , 1208 bp, 7.2%). Detecting such errors is possible before publication if each sequenced fragment is separately analyzed phylogenetically before assembling the fragments into a single mitogenome. This mitogenome has been re-used in at least four phylogenies. The error is documented to avoid the perpetuation of erroneous sequence information in the literature.

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The complete mitochondrial genome of Scolopax rusticola (Charadriiformes: Scolopacidae)

Cited by 5 publications

References 5 publications

The mitogenome of common snipe, Gallinago gallinago gallinago Linnaeus, 1758 and evolutionary implications for the family Scolopacidae

The mitogenome of common snipe, Gallinago gallinago gallinago Linnaeus, 1758 and evolutionary implications for the family Scolopacidae

The complete mitochondrial genome of Numenius phaeopus (Charadriiformes, Scolopacidae)

Complete mitochondrial genome MK992912 of Great Knot ( Calidris tenuirostris ) is a chimera with DNA from Pacific Golden Plover Pluvialis fulva (Aves: Charadriiformes)

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