The complete mitochondrial genome of Neocaridina heteropoda koreana Kubo, 1938 (Decapoda: Atyidae)

Abstract

Neocaridina heteropoda koreana Kubo, 1938 is a freshwater shrimp native to the Korean peninsula. We have determined the mitogenome of N. heteropoda koreana, which's length is 15,558 bp long including 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 674 bp. Its GC ratio is 33.0%. Gene order of N. heteropoda koreana is identical to those of other known Atyidae species. Phylogenetic trees show that N. heteropoda koreana is sister to N. davidi and placed within genus Caridina. Our mitogenome will be a useful resource for understanding molecular phylogeny of genus Neocradina.

The complete mitochondrial genome of Aphidius colemani (Hymenoptera: Braconidae: Aphidiinae)

“… 2010 ), Dinocampus coccinellae MG253265, Zele chlorophthalmus NC_039181, Meteorus pulchricornis NC_053259 (Park et al. 2019 ), Aphidius colemani OP661166, Aphidius gifuensis NC_054223 (Feng et al. 2020 ), Spathius agrili NC_014278 (Wei et al.…”

The complete mitochondrial genome of bamboo shrimp Atyopsis moluccensis (Atyidae, Decapoda)

“…nilotica (KU726823.1), Caridina gracilipes (KM023648.1), Caridina indistincta A (MH189850.1) (Schmidt 2018 ), Caridina pseudogracilirostris (OQ534868.1), Neocaridina davidi koreana (MK907783.1) (Park et al. 2019 ), Neocaridina denticulate (JX156333.1) (Yu et al. 2014 ), Atyopsis gabonensis (OP650929.1), Paratya australiensis (KM978917.1) (Gan et al.…”

The investigation of intraspecific characteristics and comparative analyses of the complete mitochondrial genome of Stegobium paniceum (Linnaeus, 1758) (Coleoptera: Ptinidae) assembled from public NGS raw reads of the black truffle, Tuber melanosporum

“…NGS raw reads of truffle (SRA accession: SRR5005499) were downloaded from NCBI and processed under the Genome Information System (GeIS, http://geis.infoboss.co.kr) which has been utilized in various genomics studies. 7–9,13,14,17,19,20,25–83 SRR5005499 dataset used in this study contains 29,010,538 100-bp-reads (2,901,053,800 bp). In the pipeline, de novo assembly and confirmation were done by Velvet v1.2.10…”

“…NGS raw reads of truffle (SRA accession: SRR5005499) were downloaded from NCBI and processed under the Genome Information System (GeIS, http://geis.infoboss.co.kr ) which has been utilized in various genomics studies. 7 – 9 , 13 , 14 , 17 , 19 , 20 , 25 – …”

“…Based on the conventional definition of SSR on organelle genomes: monoSSR (1 bp) to hexaSSR (6 bp) and total length of SSRs is above 10 bp. Because of different criteria of SSRs on organelle genomes, [92][93][94][95][96][97][98] we adopted the criteria used in organelle genomes of Figulus binodulus, 62 Sogatella furcifera (Park et al 99 ), endosymbiont of Sogatella furcifera, 20 Dysphania ambrosioides, 57 Arabidopsis thaliana, 68 Chenopodium album, 69 Rosa rugosa, 13 Plnatago (Park et al under review), and Agrimonia species (Park et al in submission): monoSSR (unit sequence length is 1 bp) to hexaSSR (6 bp) are used as normal SSRs and heptaSSR (7 bp) to decaSSR (10 bp) are defined as extended SSRs. Among normal SSRs, pentaSSRs and hexaSSRs of which unit number is 2 are classified as potential SSRs.…”