The complete mitochondrial genome of a Pabdah catfish, <i>Ompok pabda</i> (Hamilton, 1822)

Alam, Md. Jobaidul; Andriyono, Sapto; Hossain, Abul; Eunus, A. T. M.; Kim, Hyun-Woo

doi:10.1080/23802359.2018.1551079

Cited by 6 publications

(5 citation statements)

References 3 publications

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“…Similar to the other Silurid catfish (Alam et al. 2019 ), an unusual start codon was exclusively identified in COX1 gene (GTG). Incomplete stop codons (TA−/T–) were predicted in 6 genes including ND2 , COX2 , COX3 , ND3 , ND4 , and CYTb genes.…”

Section: Introductionsupporting

confidence: 61%

“…All the other 21 tRNAs were predicted to be folded into the typical clover-leaf structures, except for the tRNA Ser . Similar to the other Silurid catfish (Alam et al 2019), an unusual start codon was exclusively identified in COX1 gene (GTG). Incomplete stop codons (TAÀ/T-) were predicted in 6 genes including ND2, COX2, COX3, ND3, ND4, and CYTb genes.…”

Section: Introductionmentioning

confidence: 61%

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Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae)

Alam

Andriyono

Lee

et al. 2019

Mitochondrial DNA Part B

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The first complete mitochondrial genome sequence of Ailia coila from Bangladesh was determined by the bioinformatic assembly of the next generation sequencing (NGS) reads. The constructed circular mitogenome for A. coila was 16,565 bp in length which harbored the canonical 13 protein-coding genes, 22 tRNAs, 2 rRNAs. Two non-coding regions, control region, D-loop (927 bp), and origin of light strand replication, O L (30 bp) were also well conserved in the mitogenome. Among the currently reported mitochondrial genomes in the order Siluriformes, A. coila was most closely related to Eutropiichthys vacha (AB919123) with 85.63% sequence identity.

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Section: Introductionsupporting

confidence: 61%

Section: Introductionmentioning

confidence: 61%

Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae)

Alam

Andriyono

Lee

et al. 2019

Mitochondrial DNA Part B

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“…An unusual start codon was identified only in the COX1 gene ( GTG ), which is also shown in the other Silurid catfish (Alam et al. 2019 ). The incomplete stop codons (TA–/T–) were predicted in six genes including ND2 , COX2 , COX3 , ND3 , ND4 , and CYT b genes.…”

supporting

confidence: 52%

“…Twenty-one tRNAs were predicted to be folded into the typical clover-leaf structures, except for the tRNA-Ser. An unusual start codon was identified only in the COX1 gene (GTG), which is also shown in the other Silurid catfish (Alam et al 2019). The incomplete stop codons (TA-/T-) were predicted in six genes including ND2, COX2, COX3, ND3, ND4, and CYT b genes.…”

mentioning

confidence: 61%

Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river

Alam

Khalil

Kim³

et al. 2019

Mitochondrial DNA Part B

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The complete mitochondrial genome of Silurus soldatovi firstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, which was identical to those of family Siluridae. Twenty-eight genes were located on H strand, whereas the remaining nine genes were on L strand. Except for COX1 gene (GTG), other 12 protein-coding genes were predicted typical start codons (ATG). Among the currently known mitogenome sequences, S. soldatovi showed highest identity (99.38%) to the Chinese haplotype of S. soldatovi (NC022723) followed by the Chinese haplotype of Silurus asotus (JX087351). Interestingly, intraspecies variations of S. asotus are higher than those of interspecies and further study should be made to elucidate the evolutional relationship between two Silurus species.

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“…As a result, establishing artificial breeding and large seed production methods for endangered fish species, such as Pabda, is critical for genetic conservation of their "gene pool" as well as biodiversity (Ompok pabda) (Chaklader et al, 2016;Hossain et al, 2015;Malakar et al, 2013;Purkayastha et al, 2012). This species may be found in a variety of freshwater environments in Bangladesh, with the bulk of its population concentrated in rivers, canals, beels, swamps, and ponds; however, it can also be found in India, Pakistan, Afghanistan, and Myanmar, with a broad geographic range (Alam et al, 2019;Chakraborty et al, 2010;Nahar and Halim, 2019;Singh et al, 2017b). In Bangladesh's freshwater, there are 260 indigenous fish species that have been discovered and documented, with one-third of the total being classified as small indigenous species (SIS), with pabda being one among them (Asadujjaman et al, 2013;Galib et al, 2010;Hossain, 2010;Kostori et al, 2011;Mondal et al, 2020a;Samad et al, 2013).…”

Section: Introductionmentioning

confidence: 99%

Feeding frequency on the growth and production of endemic near-threatened Ompok pabda (Hamilton 1822) in pond setup

Islam

Samad

Paul

et al. 2021

Asian Australas. J. Biosci. Biotechnol.

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Growth and production of near threatened Ompok pabda (Hamilton) were examined at different feeding frequencies in the present study. The experiment was conducted for four months in three earthen ponds from 1st April to 31st July 2018 at Tanore Upazila in Rajshahi district, Bangladesh. The experiment was performed using pabda, (Ompok pabda) fingerling (average) to study the effect of feeding frequency on growth performance. The study carried out considering three treatments, namely T1, T2, and T3; while the feeding frequency was two times per day in treatment T1, three times per day in treatment T2, and four times per day in treatment T3. Fish were fed considering three-stage of life span; these were fingerling stage, early growing stage, and growing stage. In the fry stage, the fishes were fed 20% feed, in the fingerlings stage the fish were fed 10% feed and in the growing stage, the fish were fed 8% feed of the body weight. The mean water temperature ranged between 27.13±2.10 and 27.29±2.16 °C among treatments, while water transparency ranged between 31.91±1.58 and 29.96±1.84 cm. pH ranged between 7.62±0.14 and 7.70±0.19; while the mean dissolved oxygen was ranged between 5.35±0.11 and 5.56±0.14 among treatments. The final weight gain was found to be highest (56.36±0.01) in the treatment T2 and lowest (38.23±0.01) in the treatment T3. The SGR value was higher (3.94±0.01) in the treatments T2 followed by treatments T1 and T3. Net weight gain was significantly (p<0.05) higher in feeding frequency three (56.36±0.1), followed by feeding frequency four (38.23±0.1) and feeding frequency two (40.67±0.73). The FCR value ranged between 1.90 and 2.87 among treatments. The growth performance and specific growth rate were significantly (p<0.05) higher in feeding frequency three. The highest (4049.1±0.1 kg/ha/120 days) production was observed in T2. Best cost benefit ratio was gained in treatment T2. Asian Australas. J. Biosci. Biotechnol. 2021, 6 (2), 89-102

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The complete mitochondrial genome of a Pabdah catfish, Ompok pabda (Hamilton, 1822)

Cited by 6 publications

References 3 publications

Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae)

Characterization of the complete mitochondrial genome of Gangetic ailia, Ailia coila (Siluriformes: Ailiidae)

Characterization of the complete mitochondrial genome of Silurus soldatovi in Korean river

Feeding frequency on the growth and production of endemic near-threatened Ompok pabda (Hamilton 1822) in pond setup

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