Ruthenium red is a well known inhibitor of Ca2؉ uptake into mitochondria in vitro. However, its utility as an inhibitor of Ca 2؉ uptake into mitochondria in vivo or in situ in intact cells is limited because of its inhibitory effects on sarcoplasmic reticulum Ca 2؉ release channel and other cellular processes. We have synthesized a ruthenium derivative and found it to be an oxygen-bridged dinuclear ruthenium amine complex. It has the same chemical structure as Ru360 reported previously (Emerson, J., Clarke, M. J., Ying, W-L., and Sanadi, D. R. (1993) J. Am. Chem. Soc. 115, 11799 -11805). Ru360 has been shown to be a potent inhibitor of Ca 2؉ -stimulated respiration of liver mitochondria in vitro. However, the specificity of Ru360 on Ca 2؉ uptake into mitochondria in vitro or in intact cells has not been determined. The present study reports in detail the potency, the effectiveness, and the mechanism of inhibition of mitochondrial Ca 2؉ uptake by Ru360 and its specificity in vitro in isolated mitochondria and in situ in isolated cardiac myocytes. Ru360 was more potent (IC 50 ؍ 0.184 nM) than ruthenium red (IC 50