HDM2 is a negative regulator of p53 that inhibits its transcriptional activity and subjects it to degradation by an E3 ligase activity. The primary binding site for HDM2 on p53 is located in its N-terminal domain. A second site on the p53 core domain (p53C) binds to an unidentified site in HDM2. We found that this site is in its acidic domain and part of the zinc finger domain by examining the interaction of full-length and domain constructs of p53 with the N-terminal region of HDM2 and peptide arrays derived from the full-length protein. NMR spectroscopy showed that peptides derived from this region of HDM2 bound to residues in the specific DNA-binding site of p53C. The peptides were displaced from the site by gadd45 sequencespecific DNA. Phosphorylation of single amino acids in the central domain of HDM2 did not abolish the interaction between the HDM2-derived peptides and p53C. We speculate that this second binding site helps in stabilizing the interaction between HDM2 and p53 during p53 degradation.isothermal titration calorimetry ͉ Mdm2 ͉ NMR T he tumor suppressor protein p53 is important in maintaining genome stability and in preventing cancer development (1, 2). In response to various stress signals, p53 mediates cell-cycle arrest and apoptosis (3). p53 is a homotetramer consisting of an N-terminal transactivation domain, proline-rich regulatory domain, DNA-binding core domain (p53C), tetramerization domain, and C-terminal negative regulatory domain. Its major regulator, HDM2, is induced by p53 and acts as a feedback inhibitor (4). HDM2 regulates the activity of p53 in at least three ways. First, the N-terminal domain of HDM2 binds directly to p53's transactivation domain and inhibits its transcriptional function (5). Second, HDM2 acts as a ubiquitin ligase, targeting p53 and promoting its degradation (6, 7). Third, upon binding, HDM2 exports p53 from the nucleus to the cytoplasm (8).The interaction between peptides derived from the p53 N terminus and the HDM2-N-terminal domain has been extensively studied (9-12), and several compounds have been proposed to abolish this interaction (13-16). Recently, a new HDM2-binding site has been reported in p53C that plays a regulatory role in modulating p53 ubiquitination (17), although the exact binding site on HDM2 involved in this interaction has not yet been identified. There are conflicting speculations on its location at either the HDM2 N terminus (18) or in the acidic domain (19).Here, we examined the interaction of full-length and domain constructs of p53 with the N-terminal region of HDM2 and peptide arrays derived from the full-length protein. We found that the HDM2 N-terminal domain interacts only with p53's N-terminal domain, whereas from the peptide-array screen, we identified a second binding site for p53C located in the central domain (residues 221-302) of HDM2. We measured the binding affinity of the peptides to p53C by analytical ultracentrifugation. We identified the binding site on p53C by NMR and fluorescence anisotropy to be its DNA-binding site....