Abstract. We investigate the notion of Igusa level structure for a one-dimensional Barsotti-Tate group over a scheme X of positive characteristic and compare it to Drinfeld's notion of level structure. In particular, we show how the geometry of the Igusa covers of X is useful for studying the geometry of its Drinfeld covers (e.g. connected and smooth components, singularities).Our results apply in particular to the study of the Shimura varieties considered in [3]. In this context, they are higher dimensional analogues of the classical work of Igusa for modular curves and of the work of Carayol for Shimura curves. In the case when the Barsotti-Tate group has constant p-rank, this approach was carried-out by Harris and Taylor in [3].