ABSTRACTWe investigated genetic factors that govern the reduced propiconazole sensitivity ofSclerotinia homoeocarpafield isolates collected during a 2-year field efficacy study on dollar spot disease of turf in five New England sites. These isolates displayed a >50-fold range ofin vitrosensitivity to a sterol demethylation inhibitor (DMI) fungicide, propiconazole, making them ideal for investigations of genetic mechanisms of reduced DMI sensitivity. TheCYP51gene homolog inS. homoeocarpa(ShCYP51B), encoding the enzyme target of DMIs, is likely a minor genetic factor for reduced propiconazole sensitivity, since there were no differences in constitutive relative expression (RE) values and only 2-fold-higher induced RE values for insensitive than for sensitive isolate groups. Next, we mined RNA-Seq transcriptome data for additional genetic factors and found evidence for the overexpression of a homolog ofBotrytis cinerea atrD(BcatrD),ShatrD, a known efflux transporter of DMI fungicides. TheShatrDgene showed much higher constitutive and induced RE values for insensitive isolates. Several polymorphisms were found upstream ofShatrDbut were not definitively linked to overexpression. The screening of constitutive RE values ofShCYP51BandShatrDin isolates from two golf courses that exhibited practical field resistance to propiconazole uncovered evidence for significant population-specific overexpression of both genes. However, linear regression demonstrated that the RE ofShatrDdisplays a more significant relationship with propiconazole sensitivity than that ofShCYP51B. In summary, our results suggest that efflux is a major determinant of the reduced DMI sensitivity ofS. homoeocarpagenotypes in New England, which may have implications for the emergence of practical field resistance in this important turfgrass pathogen.