Using various spectroscopic techniques, we studied the structure of the dioxygen reduction site of the bd‐type terminal quinol oxidase in the aerobic respiratory chain of Escherichia coli. Resonance Raman and FT‐IR spectroscopies identified the v(Fe2+‐CO) and v(C‐O) stretching frequencies at 471 and 1980.7 cm−1, respectively, at the cytochrome d center of the dithionite‐reduced CO‐bound enzyme. The CO ligation in the cytochrome bd complex is considerably different from those of the heme‐copper terminal oxidases. Anaerobic addition of NO to the air‐oxidized enzyme caused an exchange of cytochrome d‐bound dioxygen with NO leading to an appearance of cytochrome d‐NO EPR signal. But there is no superhyperfine structure originating from the cytochrome d proximal 14N ligand in the central resonance of the NO EPR signal. These results suggest that cytochrome d axial ligand of the cytochrome bd complex is likely a histidine residue in an anomalous condition or other than a histidine residue and, therefore, the molecular structure around the dioxygen‐binding site is different from that of the heme‐copper terminal oxidases.