Many RNA viruses, which replicate predominantly in the cytoplasm, have nuclear components that contribute to their life cycle or pathogenesis. We investigated the intracellular localization of the multifunctional nonstructural protein 2 (nsP2) in mammalian cells infected with Venezuelan equine encephalitis virus (VEE), an important, naturally emerging zoonotic alphavirus. VEE nsP2 localizes to both the cytoplasm and the nucleus of mammalian cells in the context of infection and also when expressed alone. Through the analysis of a series of enhanced green fluorescent protein fusions, a segment of nsP2 that completely localizes to the nucleus of mammalian cells was identified. Within this region, mutation of the putative nuclear localization signal (NLS) PGKMV diminished, but did not obliterate, the ability of the protein to localize to the nucleus, suggesting that this sequence contributes to the nuclear localization of VEE nsP2. Furthermore, VEE nsP2 specifically interacted with the nuclear import protein karyopherin-␣1 but not with karyopherin-␣2, -3, or -4, suggesting that karyopherin-␣1 transports nsP2 to the nucleus during infection. Additionally, a novel nuclear export signal (NES) was identified, which included residues L526 and L528 of VEE nsP2. Leptomycin B treatment resulted in nuclear accumulation of nsP2, demonstrating that nuclear export of nsP2 is mediated via the CRM1 nuclear export pathway. Disruption of either the NLS or the NES in nsP2 compromised essential viral functions. Taken together, these results establish the bidirectional transport of nsP2 across the nuclear membrane, suggesting that a critical function of nsP2 during infection involves its shuttling between the cytoplasm and the nucleus.Venezuelan equine encephalitis virus (VEE), a New World member of the genus Alphavirus in the Togaviridae family, is a pathogen that is responsible for significant disease in equines and can cause a wide range of human symptoms, from inapparent infection to acute encephalitis. In nature, VEE is transmitted between susceptible hosts through a mosquito vector and is responsible for periodic outbreaks of widespread human and equine disease throughout the Americas.The alphaviruses are enveloped viruses with an 11.5-kb genome of single-stranded message-sense RNA. The viral genome, which resembles cellular messages because it contains 5Ј-and 3Ј-untranslated regions, a 5Ј-terminal methylguanylate cap, and a 3Ј-terminal polyadenylate tail, encodes four nonstructural proteins (nsP1 through 4) and three mature structural proteins (capsid, E2, and E1). Upon infection, this RNA genome is directly translated in the cell to produce the nonstructural polyproteins P1234 and P123, depending on whether there is readthrough at the opal stop codon present between nsP3 and nsP4 in most alphaviruses (10, 32). The polyprotein is processed by nsP2, which contains a protease domain in its carboxy terminus, to form the four individual nonstructural proteins, nsP1 to -4 (22). Early during infection, negative-sense viral RNA is sy...