The Effect of Long-Term Agricultural Use on the Bacterial Microbiota of Chernozems of the Forest-Steppe Zone

Abstract

The structure of soil microbial communities and the factors that control it are still poorly understood and cause ongoing interest. The diversity of soil bacteria reflects the diversity of existing ecological niches and trophic connections between them and with other components of the ecosystem. The presence of certain taxa with their own characteristic properties depends on the specific environmental conditions. Analysis of the composition of soil microbiota in various physicochemical conditions allows identify landmarks for understanding the principles by which it is formed. Of particular interest in this regard are the features of cultivated fertile soils that assist agricultural production. In this paper, we have assessed the occurrence of representatives of different families of bacteria in arable and nonarable chernozems of three subtypes. The methodology of 16S microbial profiling was used. The general features of the taxonomic structure of bacterial communities of chernozem remain similar, with a high occurrence of the families Sphingomonadaceae, Xanthobacteraceae, Rubrobacteraceae and Chitinophagaceae. Notably, Gemmatimonadaceae, one of the most commonly occurring families, is approximately twice as represented in arable soils as in nonarable ones. Differences between subtypes of chernozem and between arable and nonarable areas concerned different sets of bacterial families. Among others, the occurrence of representatives of families characterized by nitrogen fixation, nitrite oxidation and reduction, ethanol oxidation, biodegradation and microbial predation is touched upon. The obtained results raise the question of the factors limiting the number of certain groups of bacteria in various soil conditions and so limiting their contribution to the properties of the ecosystem.

Organic Inputs Positively Alter the Bacteriome of Post-Agricultural Soils

“…The occurrence of certain bacterial taxa with characteristic properties in the soil depends on the specific management of the soil [11]. Soil bacteria directly or indirectly promote plant growth, influence processes of vegetation succession, and can significantly affect ecosystem development [12,13].…”