Background. We explored the establishment of abnormal blood-brain barrier (BBB) permeability and its relationship to neuropathogenesis during primary human immunodeficiency virus (HIV) infection by evaluating the cerebrospinal fluid (CSF) to serum albumin quotient (Q Alb ) in patients with primary HIV infection. We also analyzed effects of initiating combination antiretroviral therapy (cART).Methods. The Q Alb was measured in longitudinal observational studies of primary HIV infection. We analyzed trajectories of the Q Alb before and after cART initiation, using mixed-effects models, and associations between the Q Alb and the CSF level of neurofilament light chain (NFL), the ratio of N-acetylaspartate to creatinine levels (a magnetic resonance spectroscopy neuronal integrity biomarker), and neuropsychological performance.Results. The baseline age-adjusted Q Alb was elevated in 106 patients with primary HIV infection (median time of measurement, 91 days after infection), compared with that in 64 controls (P = .02). Before cART initiation, the Q Alb increased over time in 84 participants with a normal baseline Q Alb (P = .006) and decreased in 22 with a high baseline Q Alb (P = .011). The Q Alb did not change after a median cART duration of 398 days, initiated at a median interval of 225 days after infection (P = .174). The Q Alb correlated with the NFL level at baseline (r = 0.497 and P < .001) and longitudinally (r = 0.555 and P < .001) and with the ratio of N-acetylaspartate to creatinine levels in parietal gray matter (r = −0.352 and P < .001 at baseline and r = −0.387 and P = .008 longitudinally) but not with neuropsychological performance.Conclusion. The Q Alb rises during primary HIV infection, associates with neuronal injury, and does not significantly improve over a year of treatment. BBB-associated neuropathogenesis in HIV-infected patients may initiate during primary infection.