The Electronic Plant Gene Register

Schmidt, Matthias; Feierabend, Juergen; Hsu, Ya-Hsuan; To, Kin‐Ying; Yang, Chih-Yuan; Yen, Hungchen Emilie; Shaw, Jei‐Fu; Hage, Tanos G.; Seither, Craig; Hildebrand, David; Liu, Junjun; Podila, Gopi K.; Hein, Frauke; Overkamp, Stefan; Barz, Wolfgang; Nozue, Kazunari; Christie, John M.; Kiyosue, Tomohiro; Briggs, Winslow R.; Wada, Masamitsu; Arredondo‐Peter, Raúl; Ramı́rez, Mario; Sarath, Gautam; Klucas, Robert V.; A, Casas-Mollano; Destéfano-Beltrán, Luis; Coleman, Gary D.; Zhu, Baolong; Park, Sang Gyu; Thornburg, Robert W.; Blanchard, David; Esen, Asım; Or, Etti; Baybik, Jenny; Sacks, Yolanta; Vilozny, Iris; Hayashi, Hiroaki; Hiraoka, Noboru; Ikeshiro, Yasumasa; Yazaki, Kazufumi; Tanaka, Shigeo; Kushiro, Toshio; Shibuya, Masabumi; Ebizuka, Yutaka; Gubler, Frank; Li, Zhongyi; Fieg, Sarah; Jacobsen, John V.; Morell, Matthew K.; Kojima, Soichi; Hanzawa, Sakiko; Hayakawa, Toshihiko; Hayashi, Makoto; Yamaya, Tomoyuki; Veau, Bertrand; Oudin, Audrey; Courtois, Martine; Chénieux, Jean-Claude; Hamdi, Saı̈d; Rideau, Marc; Clastre, Marc; Chiang, Wen-Joan; Chen, Shu-Chen Grace; Thorbjørnsen, Tine; Villand, Per; Ramstad, V. E.; Kleczkowski, Leszek A.; Olsen, Odd‐Arne; Opsahl-Ferstad, Hilde-Gunn; Anderson, James V.; Horvath, David P.

doi:10.1104/pp.119.3.1147

Cited by 16 publications

(2 citation statements)

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“…1B, genes Glyma18 g02570 and -2620) (10). The three Rhg1 genes discovered to contribute to SCN resistance encode a predicted amino acid transporter (Glyma18 g02580), an α-SNAP protein predicted to participate in disassembly of SNARE membrane trafficking complexes (Glyma18 g02590), and a protein with a WI12 (wound-inducible protein 12) region but no functionally characterized domains (Glyma18 g02610) (15)(16)(17).…”

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confidence: 99%

“…Other sequenced plant genomes do not carry close homologs of the predicted Glyma18 g02610 protein, although a wound-inducible protein in ice plant with 55% identity has been studied (17). Modeling of the Glyma18 g02610 predicted tertiary structure suggested (10) that Glyma18 g02610 may participate in the production of phenazine-like compounds that are toxic to nematodes.…”

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confidence: 99%

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Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean

Cook

Lee

Guo

et al. 2012

Science

551

655

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The rhg1-b allele of soybean is widely used for resistance against soybean cyst nematode (SCN), the most economically damaging pathogen of soybeans in the United States. Gene silencing showed that genes in a 31-kilobase segment at rhg1-b, encoding an amino acid transporter, an α-SNAP protein, and a WI12 (wound-inducible domain) protein, each contribute to resistance. There is one copy of the 31-kilobase segment per haploid genome in susceptible varieties, but 10 tandem copies are present in an rhg1-b haplotype. Overexpression of the individual genes in roots was ineffective, but overexpression of the genes together conferred enhanced SCN resistance. Hence, SCN resistance mediated by the soybean quantitative trait locus Rhg1 is conferred by copy number variation that increases the expression of a set of dissimilar genes in a repeated multigene segment.

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confidence: 99%

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confidence: 99%