To facilitate the study of pneumococcal genes that are essential for viability or normal cell growth, we sought to develop a tightly regulated, titratable gene depletion system that interferes minimally with normal cellular functions. A possible candidate for such a system is the recently discovered signal transduction pathway regulating competence for natural transformation in Streptococcus thermophilus. This pathway, which is unrelated to the ComCDE pathway used for competence regulation in Streptococcus pneumoniae, has not been fully elucidated, but it is known to include a short unmodified signaling peptide, ComS*, an oligopeptide transport system, Ami, and a transcriptional activator, ComR. The transcriptional activator is thought to bind to an inverted repeat sequence termed the ECom box. We introduced the ComR protein and the ECom box into the genome of S. pneumoniae R6 and demonstrated that addition of synthetic ComS* peptide induced the transcription of a luciferase gene inserted downstream of the ECom box. To determine whether the ComRS system could be used for gene depletion studies, the licD1 gene was inserted behind the chromosomally located ECom box promoter by using the Janus cassette. Then, the native versions of licD1 and licD2 were deleted, and the resulting mutant was recovered in the presence of ComS*. Cultivation of the licD1 licD2 double mutant in the absence of ComS* gradually affected its ability to grow and propagate, demonstrating that the ComRS system functions as intended. In the present study, the ComRS system was developed for use in S. pneumoniae. In principle, however, it should work equally well in many other Gram-positive species.Gene disruption studies have shown that the genome of Streptococcus pneumoniae R6 contains at least 133 essential genes, 32 of which have no known function (23, 25). As these studies were carried out with laboratory-grown pneumococci, it is reasonable to assume that additional genes are essential for survival under natural conditions. For obvious reasons, functional studies of essential genes are experimentally demanding. The best approach is probably to express essential genes ectopically under the control of a tightly regulated, titratable promoter. This allows deletion of the native gene, while the level of transcription of the ectopically expressed gene can be manipulated to gain insight into its function. The same technique ought to be applied to studies of growth-defective genes whose absence affects bacterial growth and proliferation. In this way it should be possible to avoid the selection pressure exerted by deletion of growth-defective genes that gives rise to suppressor mutations which mask or distort the real phenotype of the mutant.Ideally, gene expression/depletion systems should not interfere with the normal physiology of the host bacterium. The ComRS signal transduction pathway, which regulates competence for natural transformation in Streptococcus thermophilus (9), has no close homologs in S. pneumoniae. We therefore considered it a pro...